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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Ravelli, R."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Bos taurus (5)
	Parengyodontium album (4)
	Bacillus phage SPP1 (2)
	Dictyostelium discoideum (2)
	Thaumatococcus daniellii (2)
	Homo sapiens (1)
	Synechocystis sp. PCC 6803 (1)

Taxonomy

	Eukaryota (14)
	Duplodnaviria (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (3)
	SOLID-STATE NMR (2)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (7)
	1.5 - 2.0 (1)
	2.5 - 3.0 (3)
	4.0 - 4.5 (3)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (3)
	2010 - 2014 (8)
	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (9)
	Lyases (4)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (9)
	Asymmetric (8)

SCOP Classification

	Alpha and beta proteins (a/b) (6)
	All alpha proteins (4)
	All beta proteins (5)
	Alpha and beta proteins (a+b) (6)

AllSelected

1 to 17 of 17 Structures

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1O7D \| pdb_00001o7d	Download File View File

The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low pH activation

Heikinheimo, P., Helland, R., Leiros, H.S., Leiros, I., Karlsen, S., Evjen, G., Ravelli, R., Schoehn, G., Ruigrok, R., Tollersrud, O.-K., Mcsweeney, S., Hough, E.

(2003) J Mol Biology 327: 631

Released	2003-03-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	Lysosomal alpha-mannosidase (protein)
Unique Ligands	NAG, SO4, TRS, ZN
Unique branched monosaccharides	BMA, MAN, NAG

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1UUR \| pdb_00001uur	Download File View File

Structure of an activated Dictyostelium STAT in its DNA-unbound form

Soler-Lopez, M., Petosa, C., Fukuzawa, M., Ravelli, R., Williams, J.G., Muller, C.W.

(2004) Mol Cell 13: 791

Released	2004-03-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Dictyostelium discoideum
Macromolecule	STATA PROTEIN (protein)

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1UUS \| pdb_00001uus	Download File View File

Structure of an activated Dictyostelium STAT in its DNA-unbound form

Soler-Lopez, M., Petosa, C., Fukuzawa, M., Ravelli, R., Williams, J.G., Muller, C.W.

(2004) Mol Cell 13: 791

Released	2004-03-26
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Dictyostelium discoideum
Macromolecule	STAT PROTEIN (protein)

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2BLR \| pdb_00002blr	Download File View File

Thaumatin Before A High Dose X-Ray "Burn"

Nanao, M.H., Ravelli, R.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1227

Released	2005-09-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thaumatococcus daniellii
Macromolecule	THAUMATIN I (protein)
Unique Ligands	TLA

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2BLU \| pdb_00002blu	Download File View File

Thaumatin After A High Dose X-Ray "Burn"

Nanao, M.H., Ravelli, R.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1227

Released	2005-09-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thaumatococcus daniellii
Macromolecule	THAUMATIN I (protein)
Unique Ligands	TLA

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2F1K \| pdb_00002f1k	Download File View File

Crystal structure of Synechocystis arogenate dehydrogenase

Legrand, P., Dumas, R., Seux, M., Rippert, P., Ravelli, R., Ferrer, J.-L., Matringe, M.

(2006) Structure 14: 767-776

Released	2006-05-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	prephenate dehydrogenase (protein)
Unique Ligands	NAP, TRS

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3I2Y \| pdb_00003i2y	Download File View File

Proteinase K by Classical hanging drop Method before high X-Ray dose on ID14-2 Beamline at ESRF

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-06-09
Method	X-RAY DIFFRACTION 0.995 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	CA

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3I30 \| pdb_00003i30	Download File View File

Proteinase K by Classical hanging drop Method after high X-Ray dose on ID14-2 Beamline at ESRF

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-06-09
Method	X-RAY DIFFRACTION 0.992 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	CA

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3I34 \| pdb_00003i34	Download File View File

Proteinase K by LB Nanotemplate Method after high X-Ray dose on ID14-2 Beamline at ESRF

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-06-30
Method	X-RAY DIFFRACTION 1 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	CA, HG

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3I37 \| pdb_00003i37	Download File View File

Proteinase K by LB Nanotemplate Method before high X-Ray dose on ID14-2 Beamline at ESRF

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-06-09
Method	X-RAY DIFFRACTION 0.995 Å
Organisms	Parengyodontium album
Macromolecule	Proteinase K (protein)
Unique Ligands	CA

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3I67 \| pdb_00003i67	Download File View File

Ribonuclease A by LB nanotemplate method after high X-Ray dose on ESRF ID14-2 beamline

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	CL

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3I6F \| pdb_00003i6f	Download File View File

Ribonuclease A by Classical hanging drop method before high X-Ray dose on ESRF ID14-2 beamline

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	CL

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3I6H \| pdb_00003i6h	Download File View File

Ribonuclease A by LB nanotemplate method before high X-Ray dose on ESRF ID14-2 beamline

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	CL

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3I6J \| pdb_00003i6j	Download File View File

Ribonuclease A by Classical hanging drop method after high X-Ray dose on ESRF ID14-2 beamline

Pechkova, E., Tripathi, S.K., Ravelli, R., McSweeney, S., Nicolini, C.

To be published

Released	2010-07-07
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	CL

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5OQV \| pdb_00005oqv	Download File View File

Near-atomic resolution fibril structure of complete amyloid-beta(1-42) by cryo-EM

Gremer, L., Schoelzel, D., Schenk, C., Reinartz, E., Labahn, J., Ravelli, R., Tusche, M., Lopez-Iglesias, C., Hoyer, W., Heise, H., Willbold, D., Schroeder, G.F.

(2017) Science 358: 116-119

Released	2017-09-13
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Amyloid beta A4 protein (protein)

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6YEG \| pdb_00006yeg	Download File View File

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - Final EM Refinement

Zinke, M., Sachowsky, K.A.A., Zinn-Justin, S., Ravelli, R., Schroder, G.F., Habeck, M., Lange, A.

(2020) Nat Commun 11: 5759-5759

Released	2020-10-14
Method	ELECTRON MICROSCOPY 4 Å SOLID-STATE NMR
Organisms	Bacillus phage SPP1
Macromolecule	Tail tube protein gp17.1* (protein)

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6YQ5 \| pdb_00006yq5	Download File View File

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble

Zinke, M., Sachowsky, K.A.A., Zinn-Justin, S., Ravelli, R., Schroder, G.F., Habeck, M., Lange, A.

(2020) Nat Commun 11: 5759-5759

Released	2020-10-14
Method	ELECTRON MICROSCOPY 4 Å SOLID-STATE NMR
Organisms	Bacillus phage SPP1
Macromolecule	Tail tube protein gp17.1* (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1O7D | pdb_00001o7d

The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low pH activation

1UUR | pdb_00001uur

Structure of an activated Dictyostelium STAT in its DNA-unbound form

1UUS | pdb_00001uus

Structure of an activated Dictyostelium STAT in its DNA-unbound form

2BLR | pdb_00002blr

Thaumatin Before A High Dose X-Ray "Burn"

2BLU | pdb_00002blu

Thaumatin After A High Dose X-Ray "Burn"

2F1K | pdb_00002f1k

Crystal structure of Synechocystis arogenate dehydrogenase

3I2Y | pdb_00003i2y

Proteinase K by Classical hanging drop Method before high X-Ray dose on ID14-2 Beamline at ESRF

3I30 | pdb_00003i30

Proteinase K by Classical hanging drop Method after high X-Ray dose on ID14-2 Beamline at ESRF

3I34 | pdb_00003i34

Proteinase K by LB Nanotemplate Method after high X-Ray dose on ID14-2 Beamline at ESRF

3I37 | pdb_00003i37

Proteinase K by LB Nanotemplate Method before high X-Ray dose on ID14-2 Beamline at ESRF

3I67 | pdb_00003i67

Ribonuclease A by LB nanotemplate method after high X-Ray dose on ESRF ID14-2 beamline

3I6F | pdb_00003i6f

Ribonuclease A by Classical hanging drop method before high X-Ray dose on ESRF ID14-2 beamline

3I6H | pdb_00003i6h

Ribonuclease A by LB nanotemplate method before high X-Ray dose on ESRF ID14-2 beamline

3I6J | pdb_00003i6j

Ribonuclease A by Classical hanging drop method after high X-Ray dose on ESRF ID14-2 beamline

5OQV | pdb_00005oqv

Near-atomic resolution fibril structure of complete amyloid-beta(1-42) by cryo-EM

6YEG | pdb_00006yeg

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - Final EM Refinement

6YQ5 | pdb_00006yq5

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1O7D | pdb_00001o7d

1UUR | pdb_00001uur

1UUS | pdb_00001uus

2BLR | pdb_00002blr

2BLU | pdb_00002blu

2F1K | pdb_00002f1k

3I2Y | pdb_00003i2y

3I30 | pdb_00003i30

3I34 | pdb_00003i34

3I37 | pdb_00003i37

3I67 | pdb_00003i67

3I6F | pdb_00003i6f

3I6H | pdb_00003i6h

3I6J | pdb_00003i6j

5OQV | pdb_00005oqv

6YEG | pdb_00006yeg

6YQ5 | pdb_00006yq5