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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Rea, D."

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Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Sus scrofa (14)
	Brevibacillus brevis (6)
	Escherichia coli K-12 (5)
	synthetic construct (5)
	Escherichia coli (3)
	Escherichia coli C (2)
	Trypanosoma brucei (2)
	Actinomycetes (1)
	Sphingobacterium spiritivorum (1)
	Thermobifida fusca YX (1)

Taxonomy

	Bacteria (19)
	Eukaryota (16)
	other sequences (5)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

Protein (34)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (19)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (9)
	2005 - 2009 (7)
	2010 - 2014 (13)
	2015 - 2019 (5)

Enzyme Classification Name

	Lyases (13)
	Hydrolases (16)
	Ligases (3)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (17)
	Cyclic (10)
	Dihedral (7)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (19)
	All beta proteins (14)
	All alpha proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 34 Structures

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1H2Y \| pdb_00001h2y	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, Y473F MUTANT WITH COVALENTLY BOUND INHIBITOR Z-PRO-PROLINAL

Rea, D., Fulop, V.

(2002) J Biological Chem 277: 42613

Released	2002-11-11
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL, ZPR

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1H2Z \| pdb_00001h2z	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO

Rea, D., Fulop, V.

(2002) J Biological Chem 277: 42613

Released	2002-11-11
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GLY, GOL, PRO, SIN

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1O6F \| pdb_00001o6f	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, D641A MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO

Rea, D., Fulop, V.

(2002) J Biological Chem 277: 44597-44605

Released	2002-11-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sus scrofa
Macromolecule	Prolyl endopeptidase (protein)
Unique Ligands	GLY, GOL, PRO, SIN

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1O6G \| pdb_00001o6g	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, D641N MUTANT WITH BOUND PEPTIDE LIGAND SUC-GLY-PRO

Rea, D., Fulop, V.

(2002) J Biological Chem 277: 44597-44605

Released	2002-11-18
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Sus scrofa
Macromolecule	Prolyl endopeptidase (protein)
Unique Ligands	GLY, PRO, SIN

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1UOO \| pdb_00001uoo	Download File View File

Prolyl oligopeptidase from porcine brain, S554A mutant with bound peptide ligand GLY-PHE-ARG-PRO

Rea, D., Fulop, V.

(2003) J Biological Chem 278: 48786

Released	2003-10-02
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Sus scrofa synthetic construct
Macromolecule	PEPTIDE LIGAND GLY-PHE-ARG-PRO (protein) PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL

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1UOP \| pdb_00001uop	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND GLY-PHE-GLU-PRO

Rea, D., Fulop, V.

(2003) J Biological Chem 278: 48786

Released	2003-10-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Sus scrofa synthetic construct
Macromolecule	PEPTIDE LIGAND GLY-PHE-GLU-PRO (protein) PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL

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1UOQ \| pdb_00001uoq	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND GLU-PHE-SER-PRO

Rea, D., Fulop, V.

(2003) J Biological Chem 278: 48786

Released	2003-10-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sus scrofa synthetic construct
Macromolecule	PEPTIDE LIGAND GLU-PHE-SER-PRO (protein) PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL

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1VZ2 \| pdb_00001vz2	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, Y73C/V427C/C255T MUTANT

Rea, D., Fulop, V.

(2004) J Mol Biology 340: 627

Released	2004-07-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL

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1VZ3 \| pdb_00001vz3	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, T597C MUTANT

Rea, D., Fulop, V.

(2004) J Mol Biology 340: 627

Released	2004-07-01
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL

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2EB4 \| pdb_00002eb4	Download File View File

Crystal structure of apo-HpcG

Izumi, A., Rea, D., Adachi, T., Unzai, S., Park, S.Y., Roper, D.I., Tame, J.R.H.

(2007) J Mol Biology 370: 899-911

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	2-oxo-hept-3-ene-1,7-dioate hydratase (protein)
Unique Ligands	NA, SCN

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2EB5 \| pdb_00002eb5	Download File View File

Crystal structure of HpcG complexed with oxalate

Izumi, A., Rea, D., Adachi, T., Unzai, S., Park, S.Y., Roper, D.I., Tame, J.R.H.

(2007) J Mol Biology 370: 899-911

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	2-oxo-hept-3-ene-1,7-dioate hydratase (protein)
Unique Ligands	MG, OXL, SCN

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2EB6 \| pdb_00002eb6	Download File View File

Crystal structure of HpcG complexed with Mg ion

Izumi, A., Rea, D., Adachi, T., Unzai, S., Park, S.Y., Roper, D.I., Tame, J.R.H.

(2007) J Mol Biology 370: 899-911

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Escherichia coli
Macromolecule	2-oxo-hept-3-ene-1,7-dioate hydratase (protein)
Unique Ligands	MG

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2V5J \| pdb_00002v5j	Download File View File

Apo Class II aldolase HpcH

Rea, D., Fulop, V., Bugg, T.D.H., Roper, D.I.

(2007) J Mol Biology 373: 866

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli C
Macromolecule	2,4-DIHYDROXYHEPT-2-ENE-1,7-DIOIC ACID ALDOLASE (protein)
Unique Ligands	GOL, PO4

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2V5K \| pdb_00002v5k	Download File View File

Class II aldolase HpcH - magnesium - oxamate complex

Rea, D., Fulop, V., Bugg, T.D.H., Roper, D.I.

(2007) J Mol Biology 373: 866

Released	2007-10-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli C
Macromolecule	2,4-DIHYDROXYHEPT-2-ENE-1,7-DIOIC ACID ALDOLASE (protein)
Unique Ligands	MG, OXM, PO4

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2VWS \| pdb_00002vws	Download File View File

Crystal structure of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12

Rea, D., Rakus, J.F., Gerlt, J.A., Fulop, V., Bugg, T.D.H., Roper, D.I.

(2008) Biochemistry 47: 9955

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.39 Å
Organisms	Escherichia coli K-12
Macromolecule	YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE (protein)
Unique Ligands	GOL, PO4

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2VWT \| pdb_00002vwt	Download File View File

Crystal structure of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12 - Mg-pyruvate product complex

Rea, D., Rakus, J.F., Gerlt, J.A., Fulop, V., Bugg, T.D.H., Roper, D.I.

(2008) Biochemistry 47: 9955

Released	2008-09-09
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Escherichia coli K-12
Macromolecule	YFAU, 2-KETO-3-DEOXY SUGAR ALDOLASE (protein)
Unique Ligands	GOL, MG, PO4, PYR

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2XDW \| pdb_00002xdw	Download File View File

Inhibition of Prolyl Oligopeptidase with a Synthetic Unnatural Dipeptide

Racys, D.T., Rea, D., Fulop, V., Wills, M.

(2010) Bioorg Med Chem 18: 4775

Released	2010-06-23
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Sus scrofa synthetic construct
Macromolecule	Prolyl endopeptidase (protein) SYNTHETIC PEPTIDE PHQ-PRO-YCP (protein)
Unique Ligands	GOL, TAM

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4AX4 \| pdb_00004ax4	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, H680A MUTANT

Szeltner, Z., Juhasz, T., Szamosi, I., Rea, D., Fulop, V., Modos, K., Juliano, L., Polgar, L.

(2012) Biochim Biophys Acta 1834: 98

Released	2012-09-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Sus scrofa
Macromolecule	PROLYL OLIGOPEPTIDASE (protein)
Unique Ligands	GOL

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4BCB \| pdb_00004bcb	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND P2- substituted N-acyl-prolylpyrrolidine inhibitor

VanDerVeken, P., Fulop, V., Rea, D., Gerard, M., VanElzen, R., Joossens, J., Cheng, J.D., Baekelandt, V., DeMeester, I., Lambeir, A.M., Augustyns, K.

(2012) J Med Chem 55: 9856

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	4I4, GOL, TAM

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4BCC \| pdb_00004bcc	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND P2- substituted N-acyl-prolylpyrrolidine inhibitor

VanDerVeken, P., Fulop, V., Rea, D., Gerard, M., VanElzen, R., Joossens, J., Cheng, J.D., Baekelandt, V., DeMeester, I., Lambeir, A.M., Augustyns, K.

(2012) J Med Chem 55: 9856

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL, JKT, TAM

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4BCD \| pdb_00004bcd	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A NON-COVALENTLY BOUND P2-substituted N-acyl-prolylpyrrolidine inhibitor

VanDerVeken, P., Fulop, V., Rea, D., Gerard, M., VanElzen, R., Joossens, J., Cheng, J.D., Baekelandt, V., DeMeester, I., Lambeir, A.M., Augustyns, K.

(2012) J Med Chem 55: 9856

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL, TAM, TDV

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4BP8 \| pdb_00004bp8	Download File View File

Oligopeptidase B from Trypanosoma brucei - open form

Canning, P., Rea, D., Morty, R., Fulop, V.

(2013) PLoS One 8: 79349

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Trypanosoma brucei
Macromolecule	OLIGOPEPTIDASE B (protein)

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4BP9 \| pdb_00004bp9	Download File View File

Oligopeptidase B from Trypanosoma brucei with covalently bound antipain - closed form

Canning, P., Rea, D., Morty, R., Fulop, V.

(2013) PLoS One 8: 79349

Released	2014-02-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Actinomycetes Trypanosoma brucei
Macromolecule	ANTIPAIN (protein) OLIGOPEPTIDASSE B (protein)

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4BT2 \| pdb_00004bt2	Download File View File

acetolactate decarboxylase with a bound 1,2-ETHANEDIOL

A Marlow, V., Rea, D., Najmudin, S., Wills, M., Fulop, V.

(2013) ACS Chem Biol 8: 2339

Released	2013-09-11
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Brevibacillus brevis
Macromolecule	ALPHA-ACETOLACTATE DECARBOXYLASE (protein)
Unique Ligands	EDO, ZN

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4BT3 \| pdb_00004bt3	Download File View File

acetolactate decarboxylase with a bound (2R,3R)-2,3-Dihydroxy-2- methylbutanoic acid

A Marlow, V., Rea, D., Najmudin, S., Wills, M., Fulop, V.

(2013) ACS Chem Biol 8: 2339

Released	2013-09-11
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Brevibacillus brevis
Macromolecule	ALPHA-ACETOLACTATE DECARBOXYLASE (protein)
Unique Ligands	WTZ, ZN

1 to 25 of 34 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1H2Y | pdb_00001h2y

1H2Z | pdb_00001h2z

1O6F | pdb_00001o6f

1O6G | pdb_00001o6g

1UOO | pdb_00001uoo

1UOP | pdb_00001uop

1UOQ | pdb_00001uoq

1VZ2 | pdb_00001vz2

1VZ3 | pdb_00001vz3

2EB4 | pdb_00002eb4

2EB5 | pdb_00002eb5

2EB6 | pdb_00002eb6

2V5J | pdb_00002v5j

2V5K | pdb_00002v5k

2VWS | pdb_00002vws

2VWT | pdb_00002vwt

2XDW | pdb_00002xdw

4AX4 | pdb_00004ax4

4BCB | pdb_00004bcb

4BCC | pdb_00004bcc

4BCD | pdb_00004bcd

4BP8 | pdb_00004bp8

4BP9 | pdb_00004bp9

4BT2 | pdb_00004bt2

4BT3 | pdb_00004bt3