RCSB PDB: Search

5B8D \| pdb_00005b8d	Download File View File

Crystal structure of a low occupancy fragment candidate (N-(4-Methyl-1,3-thiazol-2-yl)propanamide) bound adjacent to the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Tempel, W., Collins, P., Pearce, N., Brandao-Neto, J., Douangamath, A., Ravichandran, M., Schapira, M., Bountra, C., Edwards, A.M., von Delft, F., Santhakumar, V., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2017) J Med Chem 60: 9090-9096

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	6T4, FMT, NA, UNX, ZN

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5KCH \| pdb_00005kch	Download File View File

SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy into weak electron density

Tempel, W., Harding, R.J., Mader, P., Dobrovetsky, E., Walker, J.R., Brown, P.J., Schapira, M., Collins, P., Pearce, N., Brandao-Neto, J., Douangamath, A., von Delft, F., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Santhakumar, V., Structural Genomics Consortium (SGC)

To be published

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	6RN, DMS, SO4, UNX

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5KCO \| pdb_00005kco	Download File View File

SETDB1 in complex with an early stage, low affinity fragment candidate modelled at reduced occupancy

Tempel, W., Harding, R.J., Mader, P., Dobrovetsky, E., Walker, J.R., Brown, P.J., Schapira, M., Collins, P., Pearce, N., Brandao-Neto, J., Douangamath, A., von Delft, F., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Santhakumar, V., Structural Genomics Consortium (SGC)

To be published

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	6RO, DMS, SO4, UNX

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5KH3 \| pdb_00005kh3	Download File View File

Crystal structure of fragment (3-(5-Chloro-1,3-benzothiazol-2-yl)propanoic acid) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Dong, A., Ravichandran, M., Ferreira de Freitas, R., Schapira, M., Bountra, C., Edwards, A.M., Santhakumar, V., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2017) J Med Chem 60: 9090-9096

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	6U6, UNX, ZN

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5KH6 \| pdb_00005kh6	Download File View File

SETDB1 in complex with a fragment candidate

Walker, J.R., Harding, R.J., Mader, P., Dobrovetsky, E., Dong, A., Collins, P., Pearce, N., Brandao-Neto, J., Douangamath, A., von Delft, F., Brown, P.J., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Santhakumar, V., Structural Genomics Consortium (SGC)

To be published

Released	2016-09-21
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	6SU, ACT, CL, DMS, EDO, GOL, PEG, SO4

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5KH7 \| pdb_00005kh7	Download File View File

Crystal structure of fragment (3-[6-Oxo-3-(3-pyridinyl)-1(6H)-pyridazinyl]propanoic acid) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Walker, J., Ravichandran, M., Ferreira de Freitas, R., Schapira, M., Bountra, C., Edwards, A.M., Santhakumar, V., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2017) J Med Chem 60: 9090-9096

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	6T7, UNX, ZN

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5KH9 \| pdb_00005kh9	Download File View File

Crystal structure of a low occupancy fragment candidate (5-[(4-Isopropylphenyl)amino]-6-methyl-1,2,4-triazin-3(2H)-one) bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Tempel, W., Ravichandran, M., Collins, P., Pearce, N., Brandao-Neto, J., Douangamath, A., Schapira, M., Bountra, C., Edwards, A.M., von Delft, F., Santhakumar, V., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2017) J Med Chem 60: 9090-9096

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.07 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	6T5, FMT, NA, UNX, ZN

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5QT1 \| pdb_00005qt1	Download File View File

PanDDA analysis group deposition -- Partial occupancy interpretation of PanDDA event map: SETDB1 in complex with FMOMB000017a

Harding, R.J., Tempel, W., DOUANGAMATH, A., BRANDAO-NETO, J., Collins, P.M., Krojer, T., Mader, P., Schapira, M., von Delft, F., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Santhakumar, V.

To be published

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	DMS, DSJ, EDO, SO4, UNX

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5QT2 \| pdb_00005qt2	Download File View File

PanDDA analysis group deposition -- Partial occupancy interpretation of PanDDA event map: SETDB1 in complex with FMOPL000074a

Harding, R.J., Tempel, W., DOUANGAMATH, A., BRANDAO-NETO, J., Collins, P.M., Krojer, T., Mader, P., Schapira, M., von Delft, F., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Santhakumar, V.

To be published

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	AW7, DMS, EDO, SO4, UNX

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5WBN \| pdb_00005wbn	Download File View File

Crystal structure of fragment 3-(3-Benzyl-2-oxo-2H-[1,2,4]triazino[2,3-c]quinazolin-6-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Walker, J.R., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.H.

To be published

Released	2017-08-02
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	9ZV, ACT, CL, FMT, UNX, ZN

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5WPB \| pdb_00005wpb	Download File View File

Crystal structure of fragment 3-(3-(pyridin-2-ylmethoxy)quinoxalin-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Tempel, W., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2017) J Med Chem 60: 9090-9096

Released	2017-08-23
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	B8P, UNX, ZN

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6AU2 \| pdb_00006au2	Download File View File

Crystal structure of SETDB1 Tudor domain with aryl triazole fragments

MADER, P., Mendoza-Sanchez, R., IQBAL, A., DONG, A., DOBROVETSKY, E., CORLESS, V.B., LIEW, S.K., TEMPEL, W., SMIL, D., DELA SENA, C.C., KENNEDY, S., DIAZ, D., HOLOWNIA, A., VEDADI, M., BROWN, P.J., SANTHAKUMAR, V., Bountra, C., Edwards, A.M., YUDIN, A.K., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Bioorg Med Chem 27: 3866-3878

Released	2017-10-11
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	BME, CGJ, EDO, SO4, UNX

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6AU3 \| pdb_00006au3	Download File View File

Crystal structure of SETDB1 Tudor domain with aryl triazole fragments

MADER, P., Mendoza-Sanchez, R., IQBAL, A., DONG, A., DOBROVETSKY, E., CORLESS, V.B., LIEW, S.K., TEMPEL, W., SMIL, D., DELA SENA, C.C., KENNEDY, S., DIAZ, D., HOLOWNIA, A., VEDADI, M., BROWN, P.J., SANTHAKUMAR, V., Bountra, C., Edwards, A.M., YUDIN, A.K., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein)
Unique Ligands	BWM, EDO, SO4, UNX

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6BPI \| pdb_00006bpi	Download File View File

Crystal structure of SETDB1 Tudor domain with aryl triazole fragment peptide conjugates

MADER, P., Mendoza-Sanchez, R., DONG, A., DOBROVETSKY, E., IQBAL, A., CORLESS, V., TEMPEL, W., LIEW, S.K., SMIL, D., DELA SENA, C.C., KENNEDY, S., DIAZ, D.B., SCHAPIRA, M., VEDADI, M., BROWN, P.J., Santhakumar, V., FRYE, S., Bountra, C., Edwards, A.M., YUDIN, A.K., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published

Released	2017-12-27
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase SETDB1 (protein) MLY-SER-THR-E2G (protein)
Unique Ligands	EDO, SO4, UNX

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6CE6 \| pdb_00006ce6	Download File View File

Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with 3,3'-(benzo[1,2-d:5,4-d']bis(thiazole)-2,6-diyl)dipropionic acid

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYP, UNX, ZN

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6CE8 \| pdb_00006ce8	Download File View File

Crystal structure of fragment 2-(Benzo[d]thiazol-2-yl)acetic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYV, UNX, ZN

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6CEA \| pdb_00006cea	Download File View File

Crystal structure of fragment 3-(quinolin-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYY, UNX, ZN

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6CEC \| pdb_00006cec	Download File View File

Crystal structure of fragment 3-(3-Methoxy-2-quinoxalinyl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EY7, UNX, ZN

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6CED \| pdb_00006ced	Download File View File

Crystal structure of fragment 3-(3-Methyl-4-oxo-3,4-dihydroquinazolin-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYA, UNX, ZN

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6CEE \| pdb_00006cee	Download File View File

Crystal structure of fragment 3-(1-Methyl-2-oxo-1,2-dihydroquinoxalin-3-yl)propionic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYM, UNX, ZN

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6CEF \| pdb_00006cef	Download File View File

Crystal structure of fragment 3-(1,3-Benzothiazol-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYJ, UNX, ZN

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6VAH \| pdb_00006vah	Download File View File

Crystal structure of human TEAD2 transcription factor in complex with Flufenamic acid derivative

Halabelian, L., Zeng, H., Dong, A., Li, Y., Melin, L., Gagnon, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Santhakumar, V., Structural Genomics Consortium (SGC)

To be published

Released	2020-04-15
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-4 (protein)
Unique Ligands	QZ1, UNX

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7K6C \| pdb_00007k6c	Download File View File

Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium abscessus ATCC 19977 / DSM 44196 with NADP and inhibitor P218

Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Santhakumar, V., Walpole, C., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.

(2024) J Med Chem

Released	2021-03-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacteroides abscessus ATCC 19977
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	CA, EDO, MMV, NAP