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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Settembre, E.C."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Escherichia coli (7)
	Homo sapiens (6)
	Bacillus subtilis (3)
	Simian rotavirus A strain RRV (3)
	Acetobacter aceti (1)
	Bovine rotavirus (1)
	Bovine rotavirus A (1)
	Bovine rotavirus strain NCDV/G6 (1)
	Bovine rotavirus strain UK/G6 (1)
	Human alphaherpesvirus 1 (1)

More...

Taxonomy

	Bacteria (11)
	Riboviria (8)
	Eukaryota (7)
	Duplodnaviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (22)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (26)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (9)
	2.5 - 3.0 (2)
	3.0 - 3.5 (4)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (10)
	2010 - 2014 (9)
	2015 - 2019 (1)

Enzyme Classification Name

	Transferases (13)
	Hydrolases (2)
	Oxidoreductases (2)
	Isomerases (1)

Symmetry Type

	Dihedral (11)
	Cyclic (7)
	Asymmetric (3)
	Icosahedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	Alpha and beta proteins (a+b) (3)
	Artifacts (3)
	All beta proteins (1)

AllSelected

1 to 25 of 26 Structures

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1NG3 \| pdb_00001ng3	Download File View File

Complex of ThiO (glycine oxidase) with acetyl-glycine

Settembre, E.C., Dorrestein, P.C., Park, J., Augustine, A., Begley, T.P., Ealick, S.E.

(2003) Biochemistry 42: 2971-2981

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus subtilis
Macromolecule	Glycine oxidase (protein)
Unique Ligands	AAC, FAD, PO4

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1NG4 \| pdb_00001ng4	Download File View File

Structure of ThiO (glycine oxidase) from Bacillus subtilis

Settembre, E.C., Dorrestein, P.C., Park, J., Augustine, A., Begley, T.P., Ealick, S.E.

(2003) Biochemistry 42: 2971-2981

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus subtilis
Macromolecule	Glycine oxidase (protein)
Unique Ligands	FAD, PEO, PO4

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1SD1 \| pdb_00001sd1	Download File View File

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH FORMYCIN A

Lee, J.E., Settembre, E.C., Cornell, K.A., Riscoe, M.K., Sufrin, J.R., Ealick, S.E., Howell, P.L.

(2004) Biochemistry 43: 5159-5169

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	5'-methylthioadenosine phosphorylase (protein)
Unique Ligands	FMC

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1SD2 \| pdb_00001sd2	Download File View File

STRUCTURE OF HUMAN 5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEXED WITH 5'-METHYLTHIOTUBERCIDIN

Lee, J.E., Settembre, E.C., Cornell, K.A., Riscoe, M.K., Sufrin, J.R., Ealick, S.E., Howell, P.L.

(2004) Biochemistry 43: 5159-5169

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	5'-methylthioadenosine phosphorylase (protein)
Unique Ligands	MTH, SO4

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1TGV \| pdb_00001tgv	Download File View File

Structure of E. coli Uridine Phosphorylase complexed with 5-Fluorouridine and sulfate

Bu, W., Settembre, E.C., Sanders, J.M., Begley, T.P., Ealick, S.E.

(2004) To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	uridine phosphorylase (protein)
Unique Ligands	5UD, K, SO4

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1TGY \| pdb_00001tgy	Download File View File

Structure of E. coli Uridine Phosphorylase complexed with uracil and ribose 1-phosphate

Bu, W., Settembre, E.C., Sanders, J.M., Begley, T.P., Ealick, S.E.

(2004) To be published

Released	2005-06-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	uridine phosphorylase (protein)
Unique Ligands	K, R1P, URA

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1TYG \| pdb_00001tyg	Download File View File

Structure of the thiazole synthase/ThiS complex

Settembre, E.C., Dorrestein, P.C., Zhai, H., Chatterjee, A., McLafferty, F.W., Begley, T.P., Ealick, S.E.

(2004) Biochemistry 43: 11647-11657

Released	2004-09-28
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Bacillus subtilis
Macromolecule	Thiazole biosynthesis protein thiG (protein) yjbS (protein)
Unique Ligands	PO4

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1U11 \| pdb_00001u11	Download File View File

PurE (N5-carboxyaminoimidazole Ribonucleotide Mutase) from the acidophile Acetobacter aceti

Settembre, E.C., Chittuluru, J.R., Mill, C.P., Kappock, T.J., Ealick, S.E.

(2004) Acta Crystallogr D Biol Crystallogr 60: 1753-1760

Released	2004-09-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Acetobacter aceti
Macromolecule	PurE (N5-carboxyaminoimidazole Ribonucleotide Mutase) (protein)
Unique Ligands	CIT

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1U1C \| pdb_00001u1c	Download File View File

Structure of E. coli uridine phosphorylase complexed to 5-benzylacyclouridine (BAU)

Bu, W., Settembre, E.C., Ealick, S.E.

(2005) Acta Crystallogr D Biol Crystallogr 61: 863-872

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	BAU, K, PO4

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1U1D \| pdb_00001u1d	Download File View File

Structure of e. coli uridine phosphorylase complexed to 5-(phenylthio)acyclouridine (ptau)

Bu, W., Settembre, E.C., Ealick, S.E.

(2005) Acta Crystallogr D Biol Crystallogr 61: 863-872

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Escherichia coli
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	181, K, PO4

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1U1E \| pdb_00001u1e	Download File View File

Structure of e. coli uridine phosphorylase complexed to 5(phenylseleno)acyclouridine (PSAU)

Bu, W., Settembre, E.C., Ealick, S.E.

(2005) Acta Crystallogr D Biol Crystallogr 61: 863-872

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Escherichia coli
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	182, K, PO4

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1U1F \| pdb_00001u1f	Download File View File

Structure of e. coli uridine phosphorylase complexed to 5-(m-(benzyloxy)benzyl)acyclouridine (BBAU)

Bu, W., Settembre, E.C., Ealick, S.E.

(2005) Acta Crystallogr D Biol Crystallogr 61: 863-872

Released	2005-07-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	183, K, PO4

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1U1G \| pdb_00001u1g	Download File View File

Structure of E. coli uridine phosphorylase complexed to 5-(m-(benzyloxy)benzyl)barbituric acid (BBBA)

Bu, W., Settembre, E.C., Ealick, S.E.

(2005) Acta Crystallogr D Biol Crystallogr 61: 863-872

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Uridine phosphorylase (protein)
Unique Ligands	BBB, K

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3FMG \| pdb_00003fmg	Download File View File

Structure of rotavirus outer capsid protein VP7 trimer in complex with a neutralizing Fab

Aoki, S.T., Settembre, E.C., Trask, S.D., Greenberg, H.B., Harrison, S.C., Dormitzer, P.R.

(2009) Science 324: 1444-1447

Released	2009-06-23
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Mus musculus Simian rotavirus
Macromolecule	Fab of neutralizing antibody 4F8, heavy chain (protein) Fab of neutralizing antibody 4F8, light chain (protein) Glycoprotein VP7 (protein)
Unique Ligands	CA

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3GZT \| pdb_00003gzt	Download File View File

VP7 recoated rotavirus DLP

Chen, J.Z., Settembre, E.C., Harrison, S.C., Grigorieff, N.

(2009) Proc Natl Acad Sci U S A 106: 10644-10648

Released	2009-07-14
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Simian rotavirus A strain RRV
Macromolecule	Outer capsid glycoprotein VP7 (protein)
Unique Ligands	CA
Unique branched monosaccharides	NAG

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3GZU \| pdb_00003gzu	Download File View File

VP7 recoated rotavirus DLP

Chen, J.Z., Settembre, E.C., Harrison, S.C., Grigorieff, N.

(2009) Proc Natl Acad Sci U S A 106: 10644-10648

Released	2009-07-14
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Rotavirus A Simian rotavirus A strain RRV
Macromolecule	Inner capsid protein VP2 (protein) Intermediate capsid protein VP6 (protein)
Unique Ligands	ZN

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3KZ4 \| pdb_00003kz4	Download File View File

Crystal Structure of the Rotavirus Double Layered Particle

Mcclain, B., Settembre, E.C., Bellamy, A.R., Harrison, S.C.

(2010) J Mol Biology 397: 587-599

Released	2010-03-02
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Bovine rotavirus strain UK/G6
Macromolecule	Inner capsid protein VP2 (protein) Intermediate capsid protein VP6 (protein)
Unique Ligands	ZN

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3P5B \| pdb_00003p5b	Download File View File

The structure of the LDLR/PCSK9 complex reveals the receptor in an extended conformation

Lo Surdo, P., Bottomley, M.J., Calzetta, A., Settembre, E.C., Cirillo, A., Pandit, S., Ni, Y., Hubbard, B., Sitlani, A., Carfi, A.

(2011) EMBO Rep 12: 1300-1305

Released	2011-10-26
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Low density lipoprotein receptor variant (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CA

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3P5C \| pdb_00003p5c	Download File View File

The structure of the LDLR/PCSK9 complex reveals the receptor in an extended conformation

Lo Surdo, P., Bottomley, M.J., Calzetta, A., Settembre, E.C., Cirillo, A., Pandit, S., Ni, Y., Hubbard, B., Sitlani, A., Carfi, A.

(2011) EMBO Rep 12: 1300-1305

Released	2011-10-26
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Homo sapiens
Macromolecule	Low density lipoprotein receptor variant (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	CA

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3RKI \| pdb_00003rki	Download File View File

Structural basis for immunization with post-fusion RSV F to elicit high neutralizing antibody titers

Swanson, K.A., Settembre, E.C., Shaw, C.A., Dey, A.K., Rappuoli, R., Mandl, C.W., Dormitzer, P.D., Carfi, A.

(2011) Proc Natl Acad Sci U S A 108: 9619-9624

Released	2011-05-18
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	human respiratory syncytial virus
Macromolecule	Fusion glycoprotein F0 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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3SKU \| pdb_00003sku	Download File View File

Herpes simplex virus glycoprotein D bound to the human receptor nectin-1

Di Giovine, P., Settembre, E.C., Bhargava, A.K., Luftig, M.A., Lou, H., Cohen, G.H., Eisenberg, R.J., Krummenacher, C., Carfi, A.

(2011) PLoS Pathog 7: e1002277-e1002277

Released	2011-10-12
Method	X-RAY DIFFRACTION 4 Å
Organisms	Homo sapiens Human alphaherpesvirus 1
Macromolecule	Glycoprotein D (protein) Poliovirus receptor-related protein 1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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4AU6 \| pdb_00004au6	Download File View File

Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles

Estrozi, L.F., Settembre, E.C., Goret, G., McClain, B., Zhang, X., Chen, J.Z., Grigorieff, N., Harrison, S.C.

(2013) J Mol Biology 425: 124

Released	2012-06-13
Method	ELECTRON MICROSCOPY 6 Å
Organisms	Bovine rotavirus
Macromolecule	RNA-DEPENDENT RNA POLYMERASE (protein)

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4F5X \| pdb_00004f5x	Download File View File

Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles

Estrozi, L.F., Settembre, E.C., Goret, G., McClain, B., Zhang, X., Chen, J.Z., Grigorieff, N., Harrison, S.C.

(2013) J Mol Biology 425: 124-132

Released	2012-10-24
Method	X-RAY DIFFRACTION 5 Å
Organisms	Bovine rotavirus A Bovine rotavirus strain NCDV/G6 Simian 11 rotavirus (serotype 3 / strain SA11-Patton)
Macromolecule	Intermediate capsid protein VP6 (protein) RNA-directed RNA polymerase (protein) VP2 protein (protein)
Unique Ligands	ZN

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4HHE \| pdb_00004hhe	Download File View File

Quinolinate synthase from Pyrococcus furiosus

Soriano, E.V., Zhang, Y., Settembre, E.C., Colabroy, K., Sanders, J.M., Dorrestein, P.C., Begley, T.P., Ealick, S.E.

(2013) Acta Crystallogr D Biol Crystallogr 69: 1685-1696

Released	2013-08-28
Method	X-RAY DIFFRACTION 2.797 Å
Organisms	Pyrococcus furiosus
Macromolecule	Quinolinate synthase A (protein)
Unique Ligands	CL

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4V7Q \| pdb_00004v7q	Download File View File

Atomic model of an infectious rotavirus particle

Settembre, E.C., Chen, J.Z., Dormitzer, P.R., Grigorieff, N., Harrison, S.C.

(2011) EMBO J 30: 408-416

Released	2014-07-09
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Simian rotavirus A strain RRV
Macromolecule	Core scaffold protein (protein) Intermediate capsid protein VP6 (protein) Outer capsid protein VP4 (protein) Outer layer protein VP7 (protein)
Unique Ligands	NAG, ZN
Unique branched monosaccharides	NAG

1 to 25 of 26 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1NG3 | pdb_00001ng3

1NG4 | pdb_00001ng4

1SD1 | pdb_00001sd1

1SD2 | pdb_00001sd2

1TGV | pdb_00001tgv

1TGY | pdb_00001tgy

1TYG | pdb_00001tyg

1U11 | pdb_00001u11

1U1C | pdb_00001u1c

1U1D | pdb_00001u1d

1U1E | pdb_00001u1e

1U1F | pdb_00001u1f

1U1G | pdb_00001u1g

3FMG | pdb_00003fmg

3GZT | pdb_00003gzt

3GZU | pdb_00003gzu

3KZ4 | pdb_00003kz4

3P5B | pdb_00003p5b

3P5C | pdb_00003p5c

3RKI | pdb_00003rki

3SKU | pdb_00003sku

4AU6 | pdb_00004au6

4F5X | pdb_00004f5x

4HHE | pdb_00004hhe

4V7Q | pdb_00004v7q