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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sica, F."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Homo sapiens (12)
	Dioscoreophyllum cumminsii (7)
	Equus caballus (3)
	Gallus gallus (3)
	synthetic construct (2)
	Bacillus licheniformis (1)
	Bos taurus (1)
	Streptococcus mutans (1)
	Streptococcus thermophilus (1)
	Trematomus bernacchii (1)

Taxonomy

	Eukaryota (27)
	Bacteria (3)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (30)

Polymer Entity Type

	Protein (30)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (9)
	2.0 - 2.5 (7)
	2.5 - 3.0 (9)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	2010 - 2014 (6)
	2015 - 2019 (19)
	2020 - 2024 (5)

Enzyme Classification Name

	Hydrolases (13)
	Lyases (2)
	Oxidoreductases (2)
	Transferases (1)

Membrane Protein Annotation

	MemProtMD (5)
	PDBTM (5)
	mpstruc (5)

Symmetry Type

	Asymmetric (17)
	Cyclic (10)
	Octahedral (3)

SCOP Classification

	Alpha and beta proteins (a+b) (14)
	All alpha proteins (6)
	All beta proteins (4)
	Artifacts (2)

AllSelected

1 to 25 of 30 Structures

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4G51	Download File View File

Crystallographic analysis of the interaction of nitric oxide with hemoglobin from Trematomus bernacchii in the T quaternary structure (fully ligated state).

Merlino, A., Balsamo, A., Pica, A., Mazzarella, L., Vergara, A.

(2013) Acta Crystallogr D Biol Crystallogr 69: 137-140

Released	2013-01-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Trematomus bernacchii
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM, NO

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4I7Y	Download File View File

Crystal Structure of Human Alpha Thrombin in Complex with a 27-mer Aptamer Bound to Exosite II

Pica, A., Russo Krauss, I., Merlino, A., Mazzarella, L., Sica, F.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2403-2411

Released	2013-10-16
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Prothrombin (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	0G6, NA, NAG

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4KXH	Download File View File

The X-ray crystal structure of a dimeric variant of human pancreatic ribonuclease

Pica, A., Merlino, A., Mazzarella, L., Sica, F.

(2013) Acta Crystallogr D Biol Crystallogr 69: 2116-2123

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Ribonuclease pancreatic (protein)
Unique Ligands	CL, NA, SO4

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4LZ1	Download File View File

X-ray structure of the complex between human thrombin and the TBA deletion mutant lacking thymine 12 nucleobase

Pica, A., Russo Krauss, I., Merlino, A., Sica, F.

(2013) FEBS J 280: 6581-6588

Released	2014-01-08
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) Thrombin light chain (protein) Thrombin Binding Aptamer (nucleic acid)
Unique Ligands	0G6, K, NA, NAG

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4LZ4	Download File View File

X-ray structure of the complex between human thrombin and the TBA deletion mutant lacking thymine 3 nucleobase

Pica, A., Russo Krauss, I., Merlino, A., Sica, F.

(2013) FEBS J 280: 6581-6588

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) Thrombin light chain (protein) Thrombin Binding Aptamer (TBA) (nucleic acid)
Unique Ligands	0G6, K, NA, NAG

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4N4C	Download File View File

Crystal structure of the C-terminal swapped dimer of a Bovine seminal ribonuclease mutant

Pica, A., Russo Krauss, I., Merlino, A., Sica, F.

(2013) FEBS Lett 587: 3755-3762

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Bos taurus
Macromolecule	Seminal ribonuclease (protein)
Unique Ligands	PO4

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4Y23	Download File View File

Crystal structure of T399A precursor mutant protein of gamma-glutamyl transpeptidase from Bacillus licheniformis

Pica, A., Merlino, A.

(2015) Biochim Biophys Acta 1864: 195-203

Released	2015-11-18
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Bacillus licheniformis
Macromolecule	Gamma glutamyl transpeptidase,Gamma-glutamyltranspeptidase (protein)
Unique Ligands	NA

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4YIO	Download File View File

X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus thermophilus

Russo Krauss, I., Merlino, A., Pica, A., Sica, F.

(2015) RSC Adv 5: 87876-87887

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus thermophilus
Macromolecule	Superoxide dismutase (protein)
Unique Ligands	FE, GOL, SO4

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4YIP	Download File View File

X-ray structure of the iron/manganese cambialistic superoxide dismutase from Streptococcus mutans

Russo Krauss, I., Merlino, A., Pica, A., Sica, F.

(2015) RSC Adv 5: 87876-87887

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Streptococcus mutans
Macromolecule	Superoxide dismutase [Mn/Fe] (protein)
Unique Ligands	FE

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5CMX	Download File View File

X-ray structure of the complex between human alpha thrombin and a duplex/quadruplex 31-mer DNA aptamer

Russo Krauss, I., Pica, A., Napolitano, V., Sica, F.

(2016) Nucleic Acids Res 44: 983-991

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Thrombin heavy chain (protein) alpha thrombin-light chain (protein) RE31 (nucleic acid)
Unique Ligands	0G6, K

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5EW1	Download File View File

Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT3

Pica, A., Russo Krauss, I., Parente, V., Sica, F.

(2017) Nucleic Acids Res 45: 461-469

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) thrombin light chain (protein) HD1-deltaT3 (nucleic acid) HD22 (27mer) (nucleic acid)
Unique Ligands	0G6, NA, NAG

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5EW2	Download File View File

Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT12

Pica, A., Russo Krauss, I., Parente, V., Sica, F.

(2017) Nucleic Acids Res 45: 461-469

Released	2016-11-30
Method	X-RAY DIFFRACTION 3.59 Å
Organisms	Homo sapiens
Macromolecule	Thrombin heavy chain (protein) thrombin light chain (protein) HD1-deltaT12 (nucleic acid) HD22 (27mer) (nucleic acid)
Unique Ligands	0G6, NA, NAG

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5F9U	Download File View File

X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN UPON 24 HOURS OF INCUBATION AT 20 DEGREES

Russo Krauss, I., Ferraro, G., Pica, A., Merlino, A.

(2016) J Biol Inorg Chem 21: 433-442

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CPT, GOL

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5F9X	Download File View File

X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN UPON 24 HOURS OF INCUBATION AT 55 DEGREES

Russo Krauss, I., Ferraro, G., Pica, A., Merlino, A.

(2016) J Biol Inorg Chem 21: 433-442

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CPT, GOL

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5FCP	Download File View File

X-RAY STRUCTURE OF THE ADDUCT BETWEEN HEN EGG WHITE LYSOZYME AND CISPLATIN AT LONG INCUBATION TIMES

Russo Krauss, I., Ferraro, G., Pica, A., Merlino, A.

(2016) J Biol Inorg Chem 21: 433-442

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, CPT, GOL

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5LC6	Download File View File

Crystal structure of a single chain monellin mutant: Q28K/C41S/Y65R-MNEI

Pica, A., Merlino, A.

(2016) Sci Rep 6: 34045-34045

Released	2016-10-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B,Monellin chain A (protein)
Unique Ligands	SO4

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5LC7	Download File View File

Crystal structure of a single chain monellin mutant: E23Q/Q28K/C41S/Y65R-MNEI

Pica, A., Merlino, A.

(2016) Sci Rep 6: 34045-34045

Released	2016-10-05
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B,Monellin chain A (protein)

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5O7K	Download File View File

Crystal structure of a single chain monellin mutant (Y65R) pH 2.0

Pica, A., Merlino, A.

(2017) Biochim Biophys Acta 1862: 808-815

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B,Monellin chain A (protein)
Unique Ligands	SO4

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5O7L	Download File View File

Crystal structure of a single chain monellin mutant (Y65R) pH 4.6

Pica, A., Merlino, A.

(2017) Biochim Biophys Acta 1862: 808-815

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B (protein)
Unique Ligands	SO4

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5O7Q	Download File View File

Crystal structure of a single chain monellin mutant (Y65R) pH 5.5

Pica, A., Merlino, A.

(2017) Biochim Biophys Acta 1862: 808-815

Released	2018-01-10
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B,Monellin chain A (protein)
Unique Ligands	PEG, SO4

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5O7R	Download File View File

Crystal structure of a single chain monellin mutant (Y65R) pH 6.5

Pica, A., Merlino, A.

(2017) Biochim Biophys Acta 1862: 808-815

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B,Monellin chain A (protein)
Unique Ligands	SO4

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5O7S	Download File View File

Crystal structure of a single chain monellin mutant (Y65R) pH 8.3

Pica, A., Merlino, A.

(2017) Biochim Biophys Acta 1862: 808-815

Released	2018-01-10
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Dioscoreophyllum cumminsii
Macromolecule	Monellin chain B,Monellin chain A (protein)
Unique Ligands	PEG, SO4

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6GXJ	Download File View File

X-ray structure of DiRu-1-encapsulated Apoferritin

Pica, A., Ferraro, G., Merlino, A.

(2019) ChemMedChem 14: 594-602

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, CL, GOL, SO4

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6HJT	Download File View File

The X-ray structure of the horse spleen ferritin nanocage containing Pt, obtained upon encapsulation of a Pt(II) terpyridine compound within the protein cage

Pica, A., Ferraro, G., Merlino, A.

(2018) Nanomedicine (Lond) 13: 2995-3007

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, CL, DMS, GOL, PT, SO4

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6HJU	Download File View File

The X-ray structure of the horse spleen ferritin nanocage containing Pt, obtained upon encapsulation of a Pt(II) terpyridine compound within the protein cage

Pica, A., Ferraro, G., Merlino, A.

(2018) Nanomedicine (Lond) 13: 2995-3007

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Equus caballus
Macromolecule	Ferritin light chain (protein)
Unique Ligands	CD, CL, DMS, GOL, PT, SO4

1 to 25 of 30 Structures

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