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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sokolowska, M."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Brevibacillus centrosporus (4)
	Helicobacter pylori 118 (2)
	Helicobacter pylori J99 (2)
	Kocuria varians (2)
	Mus musculus (2)

Taxonomy

	Bacteria (10)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

	Protein (12)
	DNA (8)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (11)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (5)

Enzyme Classification Name

Transferases (2)

Symmetry Type

	Asymmetric (6)
	Cyclic (6)

SCOP Classification

Alpha and beta proteins (a+b) (2)

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1 to 12 of 12 Structures

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2OA9 \| pdb_00002oa9	Download File View File

Restriction endonuclease MvaI in the absence of DNA

Kaus-Drobek, M., Czapinska, H., Sokolowska, M., Tamulaitis, G., Szczepanowski, R.H., Urbanke, K., Siksnys, V., Bochtler, M.

(2007) Nucleic Acids Res 35: 2035-2046

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Kocuria varians
Macromolecule	R.MvaI (protein)
Unique Ligands	ACT, CD, CL

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2OAA \| pdb_00002oaa	Download File View File

Restriction endonuclease MvaI-cognate DNA substrate complex

Kaus-Drobek, M., Czapinska, H., Sokolowska, M., Tamulaitis, G., Szczepanowski, R.H., Urbanke, K., Siksnys, V., Bochtler, M.

(2007) Nucleic Acids Res 35: 2035-2046

Released	2007-02-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Kocuria varians
Macromolecule	R.MvaI (protein) 5'-D(CPAPTPCPCPAPGPGPTPAPC)-3' (nucleic acid) 5'-D(GPGPTPAPCPCPTPGPGPAPT)-3' (nucleic acid)
Unique Ligands	CA

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2ODH \| pdb_00002odh	Download File View File

Restriction Endonuclease BCNI in the Absence of DNA

Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Urbanke, K., Siksnys, V., Bochtler, M.

(2007) J Mol Biology 369: 722-734

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Brevibacillus centrosporus
Macromolecule	R.BcnI (protein)
Unique Ligands	ACT, PEG

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2ODI \| pdb_00002odi	Download File View File

Restriction Endonuclease BCNI-Cognate DNA Substrate Complex

Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M.

(2007) J Mol Biology 369: 722-734

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Brevibacillus centrosporus
Macromolecule	R.BcnI (protein) 5'-D(APAPCPCPCPGPGPAPGPAPC)-3' (nucleic acid) 5'-D(CPTPCPCPGPGPGPTPTPGPT)-3' (nucleic acid)
Unique Ligands	CA, CL

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2Q10 \| pdb_00002q10	Download File View File

RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX

Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Urbanke, C., Siksnys, V., Bochtler, M.

(2007) J Mol Biology 369: 722-734

Released	2007-06-05
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Brevibacillus centrosporus
Macromolecule	R.BcnI (protein) DNA (5'-D(APAPCPCPCPGPGPAPGPAPC)-3') (nucleic acid) DNA (5'-D(CPTPCPCPGPGPGPTPTPGPT)-3') (nucleic acid)
Unique Ligands	CA, CL

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3FC3 \| pdb_00003fc3	Download File View File

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I

Sokolowska, M., Czapinska, H., Bochtler, M.

(2009) Nucleic Acids Res 37: 3799-3810

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Helicobacter pylori J99
Macromolecule	Restriction endonuclease Hpy99I (protein) 5'-(DCPDTPDCPDGPDAPDCPDGPDTPDAPDGPDA)-3' (nucleic acid) 5'-(DTPDAPDCPDGPDTPDCPDGPDAPDGPDTPDC)-3' (nucleic acid)
Unique Ligands	NA, PG4, ZN

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3GOX \| pdb_00003gox	Download File View File

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA

Sokolowska, M., Czapinska, H., Bochtler, M.

(2009) Nucleic Acids Res 37: 3799-3810

Released	2009-04-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Helicobacter pylori J99
Macromolecule	Restriction endonuclease Hpy99I (protein) 5'-(DCPDTPDCPDGPDAPDCPDGPDTPDAPDGPDA)-3' (nucleic acid) 5'-(DTPDAPDCPDGPDTPDCPDGPDAPDGPDTPDC)-3' (nucleic acid)
Unique Ligands	1PE, NA, ZN

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3IHI \| pdb_00003ihi	Download File View File

Crystal structure of mouse thymidylate synthase

Dowiercial, A., Jarmula, A., Rypniewski, W.R., Sokolowska, M., Fraczyk, T., Ciesla, J., Rode, W.

(2016) Struct Chem

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	SO4

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3IMB \| pdb_00003imb	Download File View File

Alternative binding mode of restriction endonuclease BcnI to cognate DNA

Sokolowska, M., Kaus-Drobek, M., Czapinska, H., Tamulaitis, G., Szczepanowski, R.H., Siksnys, V., Bochtler, M.

To be published

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Brevibacillus centrosporus
Macromolecule	R.BcnI (protein) 5'-D(CPGPCPCPCPGPGPAPC)-3' (nucleic acid) 5'-D(GPTPCPCPGPGPGPCPG)-3' (nucleic acid)

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3OQG \| pdb_00003oqg	Download File View File

Restriction endonuclease HPY188I in complex with substrate DNA

Sokolowska, M., Czapinska, H., Bochtler, M.

(2011) Nucleic Acids Res 39: 1554-1564

Released	2010-10-20
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Helicobacter pylori 118
Macromolecule	Hpy188I (protein) DNA 5'-D(GPAPTPCPTPGPAPAPC)-3' (nucleic acid) DNA 5'-D(GPTPTPCPAPGPAPTPC)-3' (nucleic acid)
Unique Ligands	CL, NA

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3OR3 \| pdb_00003or3	Download File View File

Restriction endonuclease HPY188I in complex with product DNA

Sokolowska, M., Czapinska, H., Bochtler, M.

(2011) Nucleic Acids Res 39: 1554-1564

Released	2010-10-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Helicobacter pylori 118
Macromolecule	RESTRICTION ENDONUCLEASE HPY188I (protein) 5'-D(GPAPTPCPT)-3' (nucleic acid) 5'-D(GPTPTPCPA)-3' (nucleic acid) 5'-D(PGPAPAPC)-3' (nucleic acid) 5'-D(PGPAPTPC)-3' (nucleic acid)
Unique Ligands	CA, CL

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4E5O \| pdb_00004e5o	Download File View File

Crystal structure of mouse thymidylate synthase in complex with dUMP

Dowiercial, A., Jarmula, A., Rypniewski, W., Sokolowska, M., Fraczyk, T., Ciesla, J., Rode, W.

(2016) Struct Chem

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	BU1, UMP

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2OA9 | pdb_00002oa9

Restriction endonuclease MvaI in the absence of DNA

2OAA | pdb_00002oaa

Restriction endonuclease MvaI-cognate DNA substrate complex

2ODH | pdb_00002odh

Restriction Endonuclease BCNI in the Absence of DNA

2ODI | pdb_00002odi

Restriction Endonuclease BCNI-Cognate DNA Substrate Complex

2Q10 | pdb_00002q10

RESTRICTION ENDONUCLEASE BcnI (WILD TYPE)-COGNATE DNA SUBSTRATE COMPLEX

3FC3 | pdb_00003fc3

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I

3GOX | pdb_00003gox

Crystal structure of the beta-beta-alpha-Me type II restriction endonuclease Hpy99I in the absence of EDTA

3IHI | pdb_00003ihi

Crystal structure of mouse thymidylate synthase

3IMB | pdb_00003imb

Alternative binding mode of restriction endonuclease BcnI to cognate DNA

3OQG | pdb_00003oqg

Restriction endonuclease HPY188I in complex with substrate DNA

3OR3 | pdb_00003or3

Restriction endonuclease HPY188I in complex with product DNA

4E5O | pdb_00004e5o

Crystal structure of mouse thymidylate synthase in complex with dUMP

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2OA9 | pdb_00002oa9

2OAA | pdb_00002oaa

2ODH | pdb_00002odh

2ODI | pdb_00002odi

2Q10 | pdb_00002q10

3FC3 | pdb_00003fc3

3GOX | pdb_00003gox

3IHI | pdb_00003ihi

3IMB | pdb_00003imb

3OQG | pdb_00003oqg

3OR3 | pdb_00003or3

4E5O | pdb_00004e5o