RCSB PDB: Search

1KQS	Download File View File

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Schmeing, T.M., Seila, A.C., Hansen, J.L., Freeborn, B., Soukup, J.K., Scaringe, S.A., Strobel, S.A., Moore, P.B., Steitz, T.A.

(2002) Nat Struct Biol 9: 225-230

Released	2002-02-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 4
Unique Ligands	ACA, BTN, CD, CL, K, MG, NA, PHA, PPU

1U6B	Download File View File

CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS

Adams, P.L., Stahley, M.R., Kosek, A.B., Wang, J., Strobel, S.A.

(2004) Nature 430: 45-50

Released	2004-08-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) 197-MER (nucleic acid) 5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPGPAPCPGP GPCPC)-3' (nucleic acid) 5'-R(CPAP*(5MU))-3' (nucleic acid)
Unique Ligands	K, MG

Stahley, M.R., Strobel, S.A.

1ZZN	Download File View File

Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.

(2005) Science 309: 1587-1590

Released	2005-08-30
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A RNA BINDING DOMAIN (protein) 197-MER (nucleic acid) 5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPGPAPCPGPGPCPC)-3' (nucleic acid) 5'-R(CPAP*(5MU))-3' (nucleic acid)
Unique Ligands	K, MG

2AKG	Download File View File

Thallium form of the G-Quadruplex from Oxytricha Nova, d(G4T4G4)2

Gill, M.L., Strobel, S.A., Loria, J.P.

(2005) J Am Chem Soc 127: 16723-16732

Released	2005-11-08
Method	SOLUTION NMR
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)

2HBN	Download File View File

Crystallization of the Tl+-form of the Oxytricha nova G-quadruplex

Gill, M.L., Strobel, S.A., Loria, J.P.

(2006) Nucleic Acids Res 34: 4506-4514

Released	2006-09-19
Method	X-RAY DIFFRACTION 1.55 Å
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	TL

Lipchock, S.V., Strobel, S.A.

3BO2	Download File View File

A relaxed active site following exon ligation by a group I intron

(2008) Proc Natl Acad Sci U S A 105: 5699-5704

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron P9 (nucleic acid) RNA (5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPG)-3') (nucleic acid) RNA (5'-R(APCPGPGPCPC)-3') (nucleic acid) RNA (5'-R(CPAP*U)-3') (nucleic acid)
Unique Ligands	MG

Lipchock, S.V., Strobel, S.A.

3BO3	Download File View File

A relaxed active site following exon ligation by a group I intron

(2008) Proc Natl Acad Sci U S A 105: 5699-5704

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron P9 (nucleic acid) RNA (5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPG)-3') (nucleic acid) RNA (5'-R(CPAPUPAPCPGPGPCP*C)-3') (nucleic acid)
Unique Ligands	K, MG

Lipchock, S.V., Strobel, S.A.

3BO4	Download File View File

A relaxed active site following exon ligation by a group I intron

(2008) Proc Natl Acad Sci U S A 105: 5699-5704

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron P9 (nucleic acid) DNA/RNA (5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPA)-D(PDG)-3') (hybrid) DNA/RNA (5'-R(CPA)-D(PDU)-R(PAPCPGPGPCP*C)-3') (hybrid)
Unique Ligands	K, MG

3G8S	Download File View File

Crystal structure of the pre-cleaved Bacillus anthracis glmS ribozyme

Strobel, S.A., Cochrane, J.C., Lipchock, S.V., Smith, K.D.

(2009) Biochemistry 48: 3239-3246

Released	2009-11-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) GLMS RIBOZYME (nucleic acid) RNA (5'-R(AP(A2M)PGPCPGPCPCPAPGPAPAPCP*U)-3') (nucleic acid)
Unique Ligands	MG

3G8T	Download File View File

Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P

Strobel, S.A., Cochrane, J.C., Lipchock, S.V., Smith, K.D.

(2009) Biochemistry 48: 3239-3246

Released	2009-11-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (5'-R(AP(A2M)PGPCPGPCPCPAPGPAPAPCP*U)-3') (nucleic acid) glmS glucosamine-6-phosphate activated ribozyme (nucleic acid)
Unique Ligands	GLP, MG

3G96	Download File View File

Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P

Strobel, S.A., Cochrane, J.C., Lipchock, S.V., Smith, K.D.

(2009) Biochemistry 48: 3239-3246

Released	2009-11-03
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) GLMS RIBOZYME (nucleic acid) RNA (5'-R(AP(A2M)PGPCPGPCPCPAPGPAPAPCP*U)-3') (nucleic acid)
Unique Ligands	6MN, MG

3G9C	Download File View File

Crystal structure of the product Bacillus anthracis glmS ribozyme

Strobel, S.A., Cochrane, J.C., Lipchock, S.V., Smith, K.D.

(2009) Biochemistry 48: 3239-3246

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) GLMS RIBOZYME (nucleic acid) RNA (5'-R(GPCPGPCPCPAPGPAPAPCP*U)-3') (nucleic acid)
Unique Ligands	GLP, MG

Lipchock, S.V., Strobel, S.A., Antonioli, A.H., Cochrane, J.C.

3IIN	Download File View File

Plasticity of the kink turn structural motif

(2010) RNA 16: 762-768

Released	2010-03-09
Method	X-RAY DIFFRACTION 4.18 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron (nucleic acid) DNA/RNA (5'-R(APAPGPCPCPAPCPAPCPAPGPAPCPC)-D(PAPGPA)-R(PCPGPGPCPC)-3') (hybrid) DNA/RNA (5'-R(CPA)-D(P*T)-3') (hybrid)
Unique Ligands	K, MG

3L3C	Download File View File

Crystal structure of the Bacillus anthracis glmS ribozyme bound to Glc6P

Strobel, S.A., Cochrane, J.C., Lipchock, S.V., Smith, K.D.

(2009) Biochemistry 48: 3239-3246

Released	2009-12-29
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A (protein) GLMS RIBOZYME (nucleic acid) RNA (5'-R(AP(A2M)GPCPGPCPCPAPGPAPAPCP*U)-3') (nucleic acid)
Unique Ligands	G6P, MG

3MUM	Download File View File

Crystal Structure of the G20A mutant c-di-GMP riboswith bound to c-di-GMP

(2010) Biochemistry 49: 7351-7359

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) G20A mutant c-di-GMP Riboswitch (nucleic acid)
Unique Ligands	C2E, MG

3MUR	Download File View File

Crystal Structure of the C92U mutant c-di-GMP riboswith bound to c-di-GMP

(2010) Biochemistry 49: 7351-7359

Released	2010-08-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) C92U mutant c-di-GMP riboswitch (nucleic acid)
Unique Ligands	C2E, MG

3MUT	Download File View File

Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-GMP

(2010) Biochemistry 49: 7351-7359

Released	2010-08-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) G20A/C92U mutant c-di-GMP riboswitch (nucleic acid)
Unique Ligands	C2E, MG

3MUV	Download File View File

Crystal Structure of the G20A/C92U mutant c-di-GMP riboswith bound to c-di-AMP

(2010) Biochemistry 49: 7351-7359

Released	2010-08-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) G20A/C92U mutant c-di-GMP riboswitch (nucleic acid)
Unique Ligands	2BA, MG

3MXH	Download File View File

Native structure of a c-di-GMP riboswitch from V. cholerae

(2010) Biochemistry 49: 7351-7359

Released	2010-08-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) c-di-GMP riboswitch (nucleic acid)
Unique Ligands	C2E, MG

3Q3Z	Download File View File

Structure of a c-di-GMP-II riboswitch from C. acetobutylicum bound to c-di-GMP

Smith, K.D., Shanahan, C.A., Moore, E.L., Simon, A.C., Strobel, S.A.

(2011) Proc Natl Acad Sci U S A 108: 7757-7762

Released	2011-05-11
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Clostridium acetobutylicum
Macromolecule	c-di-GMP-II riboswitch (nucleic acid)
Unique Ligands	C2E, MG

3UCU	Download File View File

The c-di-GMP-I riboswitch bound to pGpG

(2012) Biochemistry 51: 425-432

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (92-MER) (nucleic acid) diguanosine monophosphate (nucleic acid)
Unique Ligands	MG

3UCZ	Download File View File

The c-di-GMP-I riboswitch bound to GpG

(2012) Biochemistry 51: 425-432

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (5'-R(GPG)-3') (nucleic acid) RNA (92-MER) (nucleic acid)
Unique Ligands	MG

3UD3	Download File View File

The C92U mutant c-di-GMP-I riboswitch bound to pGpA

(2012) Biochemistry 51: 425-432

Released	2012-01-04
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (5'-R(PGPA)-3') (nucleic acid) RNA (92-MER) (nucleic acid)
Unique Ligands	MG

3UD4	Download File View File

The C92U mutant c-di-GMP-I riboswitch bound to GpA

(2012) Biochemistry 51: 425-432

Released	2012-01-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (5'-R(GPA)-3') (nucleic acid) RNA (92-MER) (nucleic acid)
Unique Ligands	MG