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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Suto, R.K."

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Search Summary

This query matches 34 Structures.

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Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (26)
	Xenopus laevis (4)
	Fusobacterium nucleatum (3)
	Mus musculus (2)
	synthetic construct (2)
	Hepatitis B virus (1)
	Saccharomyces cerevisiae (1)
	hepatitis B virus genotype A (1)

Taxonomy

	Eukaryota (29)
	Bacteria (3)
	Riboviria (2)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

	Protein (31)
	DNA (5)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (7)
	2.0 - 2.5 (8)
	2.5 - 3.0 (10)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (21)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (5)
	Oxidoreductases (3)
	Hydrolases (1)

Symmetry Type

	Asymmetric (16)
	Cyclic (15)
	Dihedral (1)

SCOP Classification

	All alpha proteins (15)
	Artifacts (9)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (1)
	Small proteins (2)

AllSelected

1 to 25 of 34 Structures

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1F66	Download File View File

2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z

Suto, R.K., Clarkson, M.J., Tremethick, D.J., Luger, K.

(2000) Nat Struct Biol 7: 1121-1124

Released	2000-11-27
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Mus musculus Xenopus laevis
Macromolecule	HISTONE H2A.Z (protein) HISTONE H2B (protein) HISTONE H3 (protein) HISTONE H4 (protein) PALINDROMIC 146 BASE PAIR DNA FRAGMENT (nucleic acid)
Unique Ligands	MN

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1ID3	Download File View File

CRYSTAL STRUCTURE OF THE YEAST NUCLEOSOME CORE PARTICLE REVEALS FUNDAMENTAL DIFFERENCES IN INTER-NUCLEOSOME INTERACTIONS

White, C.L., Suto, R.K., Luger, K.

(2001) EMBO J 20: 5207-5218

Released	2001-09-28
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Saccharomyces cerevisiae
Macromolecule	HISTONE H2A.1 (protein) HISTONE H2B.2 (protein) HISTONE H3 (protein) HISTONE H4 (protein) PALINDROMIC 146BP DNA FRAGMENT (nucleic acid)
Unique Ligands	MN

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1M18	Download File View File

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.

(2003) J Mol Biology 326: 371-380

Released	2003-02-18
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Xenopus laevis
Macromolecule	Histone H2A.1 (protein) Histone H2B.1 (protein) Histone H3.2 (protein) Histone H4 (protein) Palindromic 146 Base Pair DNA Fragment (nucleic acid)
Unique Ligands	1SZ, MN

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1M19	Download File View File

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.

(2003) J Mol Biology 326: 371-380

Released	2003-02-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xenopus laevis synthetic construct
Macromolecule	Histone H2A type 1 (protein) Histone H2B (protein) Histone H3.3C (protein) Histone H4 (protein) Palindromic 146 Base Pair DNA Fragment (nucleic acid)
Unique Ligands	ABU, BAL, DIB, IMT, MN, PYB

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1M1A	Download File View File

LIGAND BINDING ALTERS THE STRUCTURE AND DYNAMICS OF NUCLEOSOMAL DNA

Suto, R.K., Edayathumangalam, R.S., White, C.L., Melander, C., Gottesfeld, J.M., Dervan, P.B., Luger, K.

(2003) J Mol Biology 326: 371-380

Released	2003-02-18
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Xenopus laevis synthetic construct
Macromolecule	Histone H2A type 1 (protein) Histone H2B (protein) Histone H3.3C (protein) Histone H4 (protein) Palindromic 146 Base Pair DNA Fragment (nucleic acid)
Unique Ligands	ABU, BAL, DIB, IMT, MN, PYB

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3INM	Download File View File

Crystal structure of human cytosolic NADP(+)-dependent isocitrate dehydrogenase R132H mutant in complex with NADPH, ALPHA-KETOGLUTARATE and CALCIUM(2+)

Fontano, E., Brown, R.S., Suto, R.K., Bhyravbhatla, B.

(2009) Nature 462: 739-744

Released	2009-11-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Isocitrate dehydrogenase [NADP] cytoplasmic (protein)
Unique Ligands	AKG, CA, GOL, NA, NDP

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4J1P	Download File View File

X-ray crystal structure of bromodomain 2 of human brd2 in complex with rvx208 to 1.08 A resolution

Stein, A.J., White, A., Suto, R.K.

(2013) PLoS One 8: e83190-e83190

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain containing 2, isoform CRA_a (protein)
Unique Ligands	1K0, EDO

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4J3I	Download File View File

X-ray crystal structure of bromodomain complex to 1.24 A resolution

Stein, A.J., White, A., Suto, R.K.

(2013) PLoS One 8: e83190-e83190

Released	2014-01-15
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	1K0, EDO, NA

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4MPU	Download File View File

Human beta-tryptase co-crystal structure with (6S,8R)-N,N'-bis[3-({4-[3-(aminomethyl)phenyl]piperidin-1-yl}carbonyl)phenyl]-8-hydroxy-6-(1-hydroxycyclobutyl)-5,7-dioxaspiro[3.4]octane-6,8-dicarboxamide

White, A., Stein, A.J., Suto, R.K.

(2018) ACS Med Chem Lett 9: 827-831

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.649 Å
Organisms	Homo sapiens
Macromolecule	Tryptase alpha/beta-1 (protein)
Unique Ligands	MES, PG4, SO4, X2A

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4YH3	Download File View File

Crystal structure of human BRD4(1) in complex with 4-[(2E)-3-(4-methoxyphenyl)-2-phenylprop-2-enoyl]-3,4-dihydroquinoxalin-2(1H)-one (compound 19a)

White, A., Lakshminarasimhan, D., Suto, R.K.

(2015) Bioorg Med Chem Lett 25: 2818-2823

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	Y80

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4YH4	Download File View File

Crystal structure of human BRD4(1) in complex with 4-[(5-phenylpyridin-3-yl)carbonyl]-3,4-dihydroquinoxalin-2(1H)-one (compound 19d)

Lakshminarasimhan, D., White, A., Suto, R.K.

(2015) Bioorg Med Chem Lett 25: 2818-2823

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	GOL, NA, Y81

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5DW1	Download File View File

X-ray crystal structure of human BRD2(BD2) in complex with RVX297 to 1.55 A resolution

White, A., Fontano, E., Suto, R.K.

(2016) Biochem Biophys Res Commun 477: 62-67

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 2 (protein)
Unique Ligands	5GD, NA

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5DW2	Download File View File

X-ray crystal structure of human BRD4(BD1) in complex with RVX297 to 1.12 A resolution

White, A., Fontano, E., Suto, R.K.

(2016) Biochem Biophys Res Commun 477: 62-67

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	5GD, EDO

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5HLN	Download File View File

X-RAY CRYSTAL STRUCTURE OF GSK3B IN COMPLEX WITH CHIR99021

White, A., Lakshminarasimhan, D., Nadupalli, A., Suto, R.K.

(2016) ACS Chem Biol 11: 1952-1963

Released	2016-05-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	65C, MES, MG

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5HLP	Download File View File

X-RAY CRYSTAL STRUCTURE OF GSK3B IN COMPLEX WITH BRD3937

White, A., Lakshminarasimhan, D., Nadupalli, A., Suto, R.K.

(2016) ACS Chem Biol 11: 1952-1963

Released	2016-05-25
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	65A

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5KPK	Download File View File

Glycogen Synthase Kinase 3 beta Complexed with BRD0209

Lakshminarasimhan, D., White, A., Nadupalli, A., Suto, R.K.

(2018) Sci Transl Med 10:

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	6VK

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5KPL	Download File View File

Glycogen Synthase Kinase 3 beta Complexed with BRD0705

Lakshminarasimhan, D., White, A., Nadupalli, A., Suto, R.K.

(2018) Sci Transl Med 10:

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	6VL

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5KPM	Download File View File

Glycogen Synthase Kinase 3 beta Complexed with BRD3731

Lakshminarasimhan, D., White, A., Nadupalli, A., Suto, R.K.

(2018) Sci Transl Med 10:

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	6VM

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5VZ3	Download File View File

Growth Factor Crystal Structure at 1.97 Angstrom Resolution

Lakshminarasimhan, D., White, A., Suto, R.K.

(2017) Nature 550: 255-259

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Growth/differentiation factor 15 (protein)

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5VZ4	Download File View File

Receptor-growth factor crystal structure at 2.20 Angstrom resolution

Lakshminarasimhan, D., White, A., Suto, R.K.

(2017) Nature 550: 255-259

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	GDNF family receptor alpha-like (protein) Growth/differentiation factor 15 (protein)
Unique Ligands	BR, EDO, SO4

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6CZU	Download File View File

BRD4(BD1) complexed with 3219

Lakshminarasimhan, D., White, A., Suto, R.K.

(2018) J Med Chem 61: 8202-8211

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	DMS, EDO, FP7

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6CZV	Download File View File

BRD4(BD1) complexed with 2759

Lakshminarasimhan, D., White, A., Suto, R.K.

(2018) J Med Chem 61: 8202-8211

Released	2018-09-26
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	EDO, FOY

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6DN1	Download File View File

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA

Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.

(2018) ACS Chem Biol 13: 2908-2919

Released	2018-09-05
Method	X-RAY DIFFRACTION 3.03 Å
Organisms	Fusobacterium nucleatum
Macromolecule	RNA (57-MER) (nucleic acid) RNA RIBOSWITCH (nucleic acid)
Unique Ligands	GZ7, K, MG

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6DN2	Download File View File

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1354 SPLIT RNA

Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.

(2018) ACS Chem Biol 13: 2908-2919

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Fusobacterium nucleatum
Macromolecule	RNA (56-MER) (nucleic acid) RNA RIBOSWITCH (nucleic acid)
Unique Ligands	GZG, K, MG

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6DN3	Download File View File

CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1555 SPLIT RNA

Vicens, Q., Mondragon, E., Reyes, F.E., Berman, J., Kaur, H., Kells, K., Wickens, P., Wilson, J., Gadwood, R., Schostarez, H., Suto, R.K., Coish, P., Blount, K.F., Batey, R.T.

(2018) ACS Chem Biol 13: 2908-2919

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Fusobacterium nucleatum
Macromolecule	RNA (56-MER) (nucleic acid) RNA RIBOSWITCH (nucleic acid)
Unique Ligands	CL, GZ4, K, MG

1 to 25 of 34 Structures

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