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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Thomas, V.L."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Escherichia coli K-12 (7)
	Escherichia coli (2)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (7)

Enzyme Classification Name

Hydrolases (9)

Symmetry Type

	Asymmetric (8)
	Cyclic (3)

SCOP Classification

Multi-domain proteins (alpha and beta) (9)

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1 to 9 of 9 Structures

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1YT4 \| pdb_00001yt4	Download File View File

Crystal structure of TEM-76 beta-lactamase at 1.4 Angstrom resolution

Thomas, V.L., Golemi-Kotra, D., Kim, C., Vakulenko, S.B., Mobashery, S., Shoichet, B.K.

(2005) Biochemistry 44: 9330-9338

Released	2005-07-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	Beta-lactamase TEM (protein)

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3CMZ \| pdb_00003cmz	Download File View File

TEM-1 Class-A beta-lactamase L201P mutant apo structure

Marciano, D.C., Wang, X., Wang, J., Chen, Y., Thomas, V.L., Shoichet, B.K., Palzkill, T.

(2008) J Mol Biology 384: 151-164

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli
Macromolecule	Beta-lactamase TEM (protein)
Unique Ligands	PO4

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3IWI \| pdb_00003iwi	Download File View File

X-ray crystal structure of the extended-spectrum AmpC omega loop insertion (H210AAA) mutant beta-lactamase at 1.64 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	PO4

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3IWO \| pdb_00003iwo	Download File View File

X-ray crystal structure of the extended-spectrum AmpC Y221G mutant beta-lactamase at 1.90 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	PO4
Unique branched monosaccharides	FRU, GLC

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3IWQ \| pdb_00003iwq	Download File View File

X-ray crystal structure of the extended-spectrum AmpC E219K mutant beta-lactamase at 1.84 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	PO4

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3IXB \| pdb_00003ixb	Download File View File

X-ray crystal structure of the extended-spectrum AmpC E219K mutant beta-lactamase complexed with benzo(b)thiophene-2-boronic acid (BZB) at 1.63 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	BZB, PO4

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3IXD \| pdb_00003ixd	Download File View File

X-ray crystal structure of the extended-spectrum AmpC V298E mutant beta-lactamase at 2.64 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	SO4

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3IXG \| pdb_00003ixg	Download File View File

X-ray crystal structure of the extended-spectrum AmpC T70I mutant beta-lactamase with and without benzo(b)thiophene-2-boronic acid bound at 2.14 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	BZB

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3IXH \| pdb_00003ixh	Download File View File

X-ray crystal structure of the extended-spectrum AmpC Y221G mutant beta-lactamase in complex with cefotaxime at 2.3 Angstrom resolution

Shoichet, B.K., Thomas, V.L.

(2010) J Mol Biology 396: 47-59

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Beta-lactamase (protein)
Unique Ligands	CEF

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1YT4 | pdb_00001yt4

Crystal structure of TEM-76 beta-lactamase at 1.4 Angstrom resolution

3CMZ | pdb_00003cmz

TEM-1 Class-A beta-lactamase L201P mutant apo structure

3IWI | pdb_00003iwi

X-ray crystal structure of the extended-spectrum AmpC omega loop insertion (H210AAA) mutant beta-lactamase at 1.64 Angstrom resolution

3IWO | pdb_00003iwo

X-ray crystal structure of the extended-spectrum AmpC Y221G mutant beta-lactamase at 1.90 Angstrom resolution

3IWQ | pdb_00003iwq

X-ray crystal structure of the extended-spectrum AmpC E219K mutant beta-lactamase at 1.84 Angstrom resolution

3IXB | pdb_00003ixb

X-ray crystal structure of the extended-spectrum AmpC E219K mutant beta-lactamase complexed with benzo(b)thiophene-2-boronic acid (BZB) at 1.63 Angstrom resolution

3IXD | pdb_00003ixd

X-ray crystal structure of the extended-spectrum AmpC V298E mutant beta-lactamase at 2.64 Angstrom resolution

3IXG | pdb_00003ixg

X-ray crystal structure of the extended-spectrum AmpC T70I mutant beta-lactamase with and without benzo(b)thiophene-2-boronic acid bound at 2.14 Angstrom resolution

3IXH | pdb_00003ixh

X-ray crystal structure of the extended-spectrum AmpC Y221G mutant beta-lactamase in complex with cefotaxime at 2.3 Angstrom resolution

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1YT4 | pdb_00001yt4

3CMZ | pdb_00003cmz

3IWI | pdb_00003iwi

3IWO | pdb_00003iwo

3IWQ | pdb_00003iwq

3IXB | pdb_00003ixb

3IXD | pdb_00003ixd

3IXG | pdb_00003ixg

3IXH | pdb_00003ixh