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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Topf, M."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Xenopus laevis (10)
	Escherichia coli (3)
	Saccharomyces cerevisiae (2)
	Xenopus tropicalis (2)
	Actinoplanes awajinensis subsp. mycoplanecinus (1)
	Ovis aries (1)
	Streptomyces griseus (1)
	Tiamatvirus PSSP7 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (15)
	Bacteria (3)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (19)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (4)
	3.0 - 3.5 (3)
	3.5 - 4.0 (2)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (1)
	2020 - 2024 (14)

Membrane Protein Annotation

	PDBTM (11)
	mpstruc (11)
	OPM (2)
	MemProtMD (1)

Symmetry Type

	Cyclic (13)
	Asymmetric (5)
	Icosahedral (1)

SCOP Classification

	All alpha proteins (4)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 19 of 19 Structures

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1YVP	Download File View File

Ro autoantigen complexed with RNAs

Stein, A.J., Fuchs, G., Fu, C., Wolin, S.L., Reinisch, K.M.

(2005) Cell 121: 529-539

Released	2005-06-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Xenopus laevis
Macromolecule	60-kDa SS-A/Ro ribonucleoprotein (protein) Y RNA sequence, first strand (nucleic acid) Y RNA sequence, second strand (nucleic acid)
Unique Ligands	ACT, MG

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1YVR	Download File View File

Ro autoantigen

Stein, A.J., Fuchs, G., Fu, C., Wolin, S.L., Reinisch, K.M.

(2005) Cell 121: 529-539

Released	2005-06-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Xenopus laevis
Macromolecule	60-kDa SS-A/Ro ribonucleoprotein (protein)

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2B1E	Download File View File

The structures of exocyst subunit Exo70p and the Exo84p C-terminal domains reveal a common motif

Dong, G., Hutagalung, A.H., Fu, C., Novick, P., Reinisch, K.M.

(2005) Nat Struct Mol Biol 12: 1094-1100

Released	2005-11-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Exocyst complex component EXO70 (protein)

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2D2S	Download File View File

Crystal Structure of the Exo84p C-terminal Domains

Dong, G., Hutagalung, A.H., Fu, C., Novick, P., Reinisch, K.M.

(2005) Nat Struct Mol Biol 12: 1094-1100

Released	2005-11-01
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Exocyst complex component EXO84 (protein)

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2XD8	Download File View File

Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7

Liu, X., Zhang, Q., Murata, K., Baker, M.L., Sullivan, M.B., Fu, C., Dougherty, M., Schmid, M.F., Osburne, M.S., Chisholm, S.W., Chiu, W.

(2010) Nat Struct Mol Biol 17: 830

Released	2010-06-16
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Tiamatvirus PSSP7
Macromolecule	T7-LIKE CAPSID PROTEIN (protein)

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7Y5G	Download File View File

Cryo-EM structure of a eukaryotic ZnT8 in the presence of zinc

Zhang, S., Fu, C., Luo, Y., Sun, Z., Su, Z., Zhou, X.

(2022) J Struct Biol 215: 107926-107926

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.85 Å
Organisms	Xenopus tropicalis
Macromolecule	Zinc transporter 8 (protein)
Unique Ligands	ZN

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7Y5H	Download File View File

Cryo-EM structure of a eukaryotic ZnT8 at a low pH

Zhang, S., Fu, C., Luo, Y., Sun, Z., Su, Z., Zhou, X.

(2022) J Struct Biol 215: 107926-107926

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.72 Å
Organisms	Xenopus tropicalis
Macromolecule	Zinc transporter 8 (protein)
Unique Ligands	ZN

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8CIX	Download File View File

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Griselimycin.

Fu, C., Liu, Y., Walt, C., Bader, C., Rasheed, S., Lukat, P., Neuber, M., Blankenfeldt, W., Kalinina, O., Mueller, R.

(2024) Nat Commun 15: 791-791

Released	2023-11-29
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Escherichia coli Streptomyces griseus
Macromolecule	Beta sliding clamp (protein) Griselimycin (protein)
Unique Ligands	ACT, CA, GOL, MG, NA

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8CIY	Download File View File

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Cyclohexyl-Griselimycin.

Fu, C., Liu, Y., Walt, C., Bader, C., Rasheed, S., Lukat, P., Neuber, M., Blankenfeldt, W., Kalinina, O., Mueller, R.

(2024) Nat Commun 15: 791-791

Released	2023-11-29
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Beta sliding clamp (protein) Cyclohexyl-Griselimycin (protein)
Unique Ligands	ACT, CA, GOL, MG, NA

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8CIZ	Download File View File

DNA-polymerase sliding clamp (DnaN) from Escherichia coli in complex with Mycoplanecin A.

Fu, C., Liu, Y., Walt, C., Bader, C., Rasheed, S., Lukat, P., Neuber, M., Blankenfeldt, W., Kalinina, O., Mueller, R.

(2024) Nat Commun 15: 791-791

Released	2023-11-29
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Actinoplanes awajinensis subsp. mycoplanecinus Escherichia coli
Macromolecule	Beta sliding clamp (protein) Mycoplanecin A (protein)

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8W4B	Download File View File

The sigma-1 receptor from Xenopus laevis in complex with progesterone by co-crystallization

Xiao, Y., Fu, C., Sun, Z., Zhou, X.

(2024) Nat Commun 15: 5619-5619

Released	2024-07-17
Method	X-RAY DIFFRACTION 2.152 Å
Organisms	Xenopus laevis
Macromolecule	Sigma non-opioid intracellular receptor 1 (protein)
Unique Ligands	STR

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8W4C	Download File View File

The sigma-1 receptor from Xenopus laevis in complex with progesterone by soaking

Xiao, Y., Fu, C., Sun, Z., Zhou, X.

(2024) Nat Commun 15: 5619-5619

Released	2024-07-17
Method	X-RAY DIFFRACTION 2.676 Å
Organisms	Xenopus laevis
Macromolecule	Sigma non-opioid intracellular receptor 1 (protein)
Unique Ligands	STR

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8W4D	Download File View File

Crystal structure of the sigma-1 receptor from Xenopus laevis in the absence of known ligands

Xiao, Y., Fu, C., Sun, Z., Zhou, X.

(2024) Nat Commun 15: 5619-5619

Released	2024-07-17
Method	X-RAY DIFFRACTION 2.173 Å
Organisms	Xenopus laevis
Macromolecule	Sigma non-opioid intracellular receptor 1 (protein)

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8W4E	Download File View File

Crystal structure of the sigma-1 receptor from Xenopus laevis in the absence of known ligands (C2 form)

Xiao, Y., Fu, C., Sun, Z., Zhou, X.

(2024) Nat Commun 15: 5619-5619

Released	2024-07-17
Method	X-RAY DIFFRACTION 2.805 Å
Organisms	Xenopus laevis
Macromolecule	Sigma non-opioid intracellular receptor 1 (protein)

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8WUE	Download File View File

The sigma-1 receptor from Xenopus laevis in complex with dehydroepiandrosterone sulfate by soaking (C2 form)

Fu, C., Sun, Z., Zhou, X.

(2024) Nat Commun 15: 5619-5619

Released	2024-07-17
Method	X-RAY DIFFRACTION 3.089 Å
Organisms	Xenopus laevis
Macromolecule	Sigma non-opioid intracellular receptor 1 (protein)
Unique Ligands	ZWY

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8WWB	Download File View File

The sigma-1 receptor from Xenopus laevis in complex with dehydroepiandrosterone sulfate by soaking (I432 form)

Fu, C., Sun, Z., Zhou, X.

(2024) Nat Commun 15: 5619-5619

Released	2024-07-17
Method	X-RAY DIFFRACTION 2.503 Å
Organisms	Xenopus laevis
Macromolecule	Sigma non-opioid intracellular receptor 1 (protein)
Unique Ligands	ZWY