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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Umena, Y."

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Search Summary

This query matches 4 Structures.

Refinements

Structure Determination Methodology

experimental (4)

Scientific Name of Source Organism

	Escherichia coli K-12 (3)
	Thermosynechococcus vestitus BP-1 (1)

Taxonomy

Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (4)

Refinement Resolution (Å)

2.0 - 2.5 (4)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (1)

Enzyme Classification Name

Oxidoreductases (4)

Membrane Protein Annotation

	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Cyclic (3)
	Asymmetric (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	All alpha proteins (1)

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1 to 4 of 4 Structures

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3ANL	Download File View File

Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with pyridin-2-ylmethylphosphonic acid

Endo, K., Kato, M., Deng, L., Song, Y., Yajima, S.

(2011) ACS Med Chem Lett 2: 165-170

Released	2011-02-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	NDP, SYC

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3ANM	Download File View File

Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with 5-phenylpyridin-2-ylmethylphosphonic acid

Endo, K., Kato, M., Deng, L., Song, Y., Yajima, S.

(2011) ACS Med Chem Lett 2: 165-170

Released	2011-02-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	NDP, SYD

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3ANN	Download File View File

Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) complexed with quinolin-2-ylmethylphosphonic acid

Endo, K., Kato, M., Deng, L., Song, Y., Yajima, S.

(2011) ACS Med Chem Lett 2: 165-170

Released	2011-02-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli K-12
Macromolecule	1-deoxy-D-xylulose 5-phosphate reductoisomerase (protein)
Unique Ligands	NDP, SYE

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5ZZN	Download File View File

Crystal structure of photosystem II from an SQDG-deficient mutant of Thermosynechococcus elongatus

Nakajima, Y., Umena, Y., Nagao, R., Endo, K., Kobayashi, K., Akita, F., Suga, M., Wada, H., Noguchi, T., Shen, J.R.

(2018) J Biol Chem 293: 14786-14797

Released	2018-08-01
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, UNL

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Structure Determination Methodology

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Experimental Method

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