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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Urnavicius, L."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Homo sapiens (21)
	Saccharomyces cerevisiae (7)
	Sus scrofa (6)
	Mus musculus (3)
	Tequatrovirus T4 (3)
	Saccharomyces cerevisiae S288C (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (31)
	Duplodnaviria (3)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (28)
	X-RAY DIFFRACTION (3)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (5)
	3.5 - 4.0 (8)
	4.0 - 4.5 (5)
	> 4.5 (11)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (15)
	2020 - 2024 (15)

Enzyme Classification Name

Hydrolases (13)

Symmetry Type

	Asymmetric (28)
	Cyclic (3)

AllSelected

1 to 25 of 31 Structures

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4RH7	Download File View File

Crystal structure of human cytoplasmic dynein 2 motor domain in complex with ADP.Vi

Schmidt, H., Zalyte, R., Urnavicius, L., Carter, A.P.

(2015) Nature 518: 435-438

Released	2014-12-10
Method	X-RAY DIFFRACTION 3.41 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Green fluorescent protein/Cytoplasmic dynein 2 heavy chain 1 (protein)
Unique Ligands	ADP, AOV, ATP, MG

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5ADX	Download File View File

CryoEM structure of dynactin complex at 4.0 angstrom resolution

Zhang, K., Urnavicius, L., Diamant, A.G., Motz, C., Schlage, M.A., Yu, M., Patel, N.A., Robinson, C.V., Carter, A.P.

(2015) Science 347: 1441

Released	2015-12-30
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 17

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5AFR	Download File View File

N-terminal fragment of dynein heavy chain

Urnavicius, L., Zhang, K., Diamant, A.G., Motz, C., Schlager, M.A., Yu, M., Patel, N.A., Robinson, C.V., Carter, A.P.

(2015) Science 347: 1441

Released	2015-02-18
Method	X-RAY DIFFRACTION 5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	DYNEIN HEAVY CHAIN, CYTOPLASMIC (protein)

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5AFU	Download File View File

Cryo-EM structure of dynein tail-dynactin-BICD2N complex

Urnavicius, L., Zhang, K., Diamant, A.G., Motz, C., Schlager, M.A., Yu, M., Patel, N.A., Robinson, C.V., Carter, A.P.

(2015) Science 347: 1441

Released	2015-03-11
Method	ELECTRON MICROSCOPY 8.2 Å
Organisms	Sus scrofa
Macromolecule	Unique protein chains: 22
Unique Ligands	ADP, ATP

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5OWO	Download File View File

Human cytoplasmic Dynein N-Terminus dimerization domain at 1.8 Angstrom resolution

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-07-11
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Cytoplasmic dynein 1 heavy chain 1 (protein)
Unique Ligands	CA, GOL, K, MG, NA

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6F1T	Download File View File

Cryo-EM structure of two dynein tail domains bound to dynactin and BICDR1

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens Mus musculus Sus scrofa
Macromolecule	Unique protein chains: 24
Unique Ligands	ADP, ATP

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6F1U	Download File View File

N terminal region of dynein tail domains in complex with dynactin filament and BICDR-1

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens Mus musculus Sus scrofa
Macromolecule	Unique protein chains: 8
Unique Ligands	ADP

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6F1V	Download File View File

C terminal region of the dynein heavy chains in the dynein tail/dynactin/BICDR1 complex

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Cytoplasmic dynein 1 heavy chain 1 (protein)

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6F1Y	Download File View File

Dynein light intermediate chain region of the dynein tail/dynactin/BICDR1 complex

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Cytoplasmic dynein 1 heavy chain 1,Dynein heavy chain (protein) Cytoplasmic dynein 1 light intermediate chain 2 (protein)

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6F1Z	Download File View File

Roadblock-1 region of the dynein tail/dynactin/BICDR1 complex

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	Cytoplasmic dynein 1 intermediate chain 2 (protein) Dynein light chain roadblock-type 1 (protein)

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6F38	Download File View File

Cryo-EM structure of two dynein tail domains bound to dynactin and HOOK3

Lau, C.K., Urnavicius, L., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 6.7 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Unique protein chains: 23
Unique Ligands	ADP, ATP

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6F3A	Download File View File

Cryo-EM structure of a single dynein tail domain bound to dynactin and BICD2N

Urnavicius, L., Lau, C.K., Elshenawy, M.M., Morales-Rios, E., Motz, C., Yildiz, A., Carter, A.P.

(2018) Nature 554: 202-206

Released	2018-01-17
Method	ELECTRON MICROSCOPY 8.2 Å
Organisms	Homo sapiens Mus musculus Sus scrofa
Macromolecule	Unique protein chains: 21
Unique Ligands	ADP, ATP

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6HYD	Download File View File

Rea1 Wild type ADP state (tail part)

Sosnowski, P., Urnavicius, L., Boland, A., Fagiewicz, R., Busselez, J., Papai, G., Schmidt, H.

(2018) Elife 7:

Released	2018-12-12
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Midasin,Midasin,Midasin (protein)

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6HYP	Download File View File

Rea1 Wild type ADP state (AAA+ ring part)

Sosnowski, P., Urnavicius, L., Boland, A., Fagiewicz, R., Busselez, J., Papai, G., Schmidt, H.

(2018) Elife 7:

Released	2018-12-12
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Midasin,Midasin (protein)
Unique Ligands	ADP

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6I26	Download File View File

Rea1 Wild type AMPPNP state

Sosnowski, P., Urnavicius, L., Boland, A., Fagiewicz, R., Busselez, J., Papai, G., Schmidt, H.

(2018) Elife 7:

Released	2018-12-12
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Midasin,Midasin,Midasin,Midasin (protein)

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6I27	Download File View File

Rea1 AAA2L-H2alpha deletion mutant in AMPPNP State

Sosnowski, P., Urnavicius, L., Boland, A., Fagiewicz, R., Busselez, J., Papai, G., Schmidt, H.

(2018) Elife 7:

Released	2018-12-12
Method	ELECTRON MICROSCOPY 7.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Midasin,Midasin,Midasin,Midasin,Midasin,Midasin,Midasin (protein)

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6V5V	Download File View File

Structure of gamma-tubulin in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Tubulin gamma-1 chain (protein)
Unique Ligands	GDP

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6V69	Download File View File

Structures of GCP4 and GCP5 in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Gamma-tubulin complex component 4 (protein) Gamma-tubulin complex component 5 (protein)

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6V6B	Download File View File

Structures of GCP2 and GCP3 in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens
Macromolecule	Gamma-tubulin complex component 2 (protein) Gamma-tubulin complex component 3 (protein)

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6V6C	Download File View File

Structure of GCP6 in the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens
Macromolecule	Gamma-tubulin complex component 6 (protein)

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6V6S	Download File View File

Structure of the native human gamma-tubulin ring complex

Wieczorek, M., Urnavicius, L., Ti, S., Molloy, K.R., Chait, B.T., Kapoor, T.M.

(2020) Cell 180: 165-175.e16

Released	2020-01-01
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 11
Unique Ligands	ADP, GDP

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6X0U	Download File View File

Structure of MZT1/GCP3-NHD and MZT1/GCP6-NHD in the gamma-TuRC lumenal bridge

Wieczorek, M., Huang, T.-L., Urnavicius, L., Hsia, K.-C., Kapoor, T.M.

(2020) Cell Rep 31: 107791-107791

Released	2020-07-22
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Gamma-tubulin complex component 3 (protein) Gamma-tubulin complex component 6 (protein) Mitotic-spindle organizing protein 1 (protein)

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6X0V	Download File View File

Structure of MZT2/GCP-NHD and CDK5Rap2 at position 13 of the gamma-TuRC

Wieczorek, M., Huang, T.-L., Urnavicius, L., Hsia, K.-C., Kapoor, T.M.

(2020) Cell Rep 31: 107791-107791

Released	2020-07-22
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens
Macromolecule	Centrosome protein Cep215 (protein) Gamma-tubulin complex component 2 (protein) Mitotic-spindle organizing protein 2A (protein)

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7MI3	Download File View File

Signal subtracted reconstruction of AAA2, AAA3, and AAA4 domains of dynein in the presence of a pyrazolo-pyrimidinone-based compound, Model 4

Santarossa, C.C., Coudray, N., Urnavicius, L., Ekiert, D.C., Bhabha, G., Kapoor, T.M.

(2021) Cell Chem Biol 28: 1460-1473.e15

Released	2021-05-26
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae Tequatrovirus T4
Macromolecule	Fusion protein of Dynein and Endolysin (protein)
Unique Ligands	ATP, MG, ZG7

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7MI6	Download File View File

Yeast dynein motor domain in the presence of a pyrazolo-pyrimidinone-based compound, Model 1

Santarossa, C.C., Urnavicius, L., Coudray, N., Ekeirt, D.C., Bhabha, G., Kapoor, T.M.

(2021) Cell Chem Biol 28: 1460-1473.e15

Released	2021-05-26
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Saccharomyces cerevisiae Tequatrovirus T4
Macromolecule	Fusion protein of Dynein and Endolysin (protein)
Unique Ligands	ATP, MG, ZG7

1 to 25 of 31 Structures

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