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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Wright, D.L."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Escherichia coli (6)
	Staphylococcus aureus (5)

Taxonomy

Bacteria (11)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (5)

Release Date

	2015 - 2019 (3)
	2020 - 2024 (8)

Enzyme Classification Name

Oxidoreductases (11)

Symmetry Type

	Cyclic (6)
	Asymmetric (5)

SCOP Classification

Alpha and beta proteins (a/b) (3)

AllSelected

1 to 11 of 11 Structures

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6ND2 \| pdb_00006nd2	Download File View File

Staphylococcus aureus Dihydrofolate Reductase complexed with NADPH and 6-ETHYL-5-[(3R)-3-[2-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP1063)

Reeve, S.M., Wright, D.L.

(2019) Drug Metab Dispos 47: 995-1003

Released	2019-09-25
Method	X-RAY DIFFRACTION 2.243 Å
Organisms	Staphylococcus aureus
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	G8J, GOL, XNP

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6P9Z \| pdb_00006p9z	Download File View File

Staphylococcus aureus Dihydrofolate reductase in complex with NADPH and Methotrexate

Reeve, S.M., Wright, D.L.

(2019) ACS Infect Dis 5: 1896-1906

Released	2019-10-23
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Staphylococcus aureus
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	GOL, MTX, NAP

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6PBO \| pdb_00006pbo	Download File View File

Staphylococcus aureus Dihydrofolate reductase in complex with NADPH and UCP1232

Reeve, S.M., Wright, D.L.

(2019) ACS Infect Dis 5: 1896-1906

Released	2019-10-23
Method	X-RAY DIFFRACTION 1.649 Å
Organisms	Staphylococcus aureus
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	NAP, O71, XNP

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7MQP \| pdb_00007mqp	Download File View File

E. coli dihydrofolate reductase complexed with 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)

Lombardo, M.N., Wright, D.L.

(2022) Commun Biol 5: 459-459

Released	2022-05-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	SO4, ZM4

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7REB \| pdb_00007reb	Download File View File

E. coli dihydrofolate reductase complexed with 5-(3-(7-(4-(aminomethyl)phenyl)benzo[d][1,3]dioxol-5-yl)but-1-yn-1-yl)-6-ethylpyrimidine-2,4-diamine (UCP1223)

Lombardo, M.N., Wright, D.L.

(2022) Commun Biol 5: 459-459

Released	2022-07-27
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Escherichia coli
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	560, SO4

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7REG \| pdb_00007reg	Download File View File

DfrA1 complexed with NADPH and 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)

Lombardo, M.N., Wright, D.L.

(2022) Commun Biol 5: 459-459

Released	2022-07-27
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Escherichia coli
Macromolecule	Dihydrofolate reductase type 1 (protein)
Unique Ligands	4SI, CA, NAP

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7RGJ \| pdb_00007rgj	Download File View File

DfrA1 complexed with NADPH and 5-(3-(7-(4-(aminomethyl)phenyl)benzo[d][1,3]dioxol-5-yl)but-1-yn-1-yl)-6-ethylpyrimidine-2,4-diamine (UCP1223)

Lombardo, M.N., Wright, D.L.

(2022) Commun Biol 5: 459-459

Released	2022-05-25
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Escherichia coli
Macromolecule	Dihydrofolate reductase type 1 (protein)
Unique Ligands	560, 8MU, CA, NAP

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7RGK \| pdb_00007rgk	Download File View File

DfrA5 complexed with NADPH and 5-(3-(7-(4-(aminomethyl)phenyl)benzo[d][1,3]dioxol-5-yl)but-1-yn-1-yl)-6-ethylpyrimidine-2,4-diamine (UCP1223)

Lombardo, M.N., Wright, D.L.

(2022) Commun Biol 5: 459-459

Released	2022-05-25
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Escherichia coli
Macromolecule	Dihydrofolate reductase type 5 (protein)
Unique Ligands	560, NAP, SO4

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7RGO \| pdb_00007rgo	Download File View File

DfrA5 complexed with NADPH and 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)

Lombardo, M.N., Wright, D.L.

(2022) Commun Biol 5: 459-459

Released	2022-05-25
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli
Macromolecule	Dihydrofolate reductase type 5 (protein)
Unique Ligands	4SI, GOL, NAP, SO4

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7T7Q \| pdb_00007t7q	Download File View File

R-27 In Complex with S. aureus DHFR and alpha-NADPH - Remediated for comparison with tNADPH

Reeve, S.M., Wang, S., Donald, B.R., Wright, D.L.

(2022) PLoS Comput Biol 18: e1009855-e1009855

Released	2022-02-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	06U, ACT, NDW

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7T7S \| pdb_00007t7s	Download File View File

R-27 in Complex with S. aureus DHFR and tricyclic-NADPH (tNADPH)

Reeve, S.M., Wang, S., Donald, B.R., Wright, D.L.

(2022) PLoS Comput Biol 18: e1009855-e1009855

Released	2022-02-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	Dihydrofolate reductase (protein)
Unique Ligands	06U, ACT, XNP

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6ND2 | pdb_00006nd2

Staphylococcus aureus Dihydrofolate Reductase complexed with NADPH and 6-ETHYL-5-[(3R)-3-[2-METHOXY-5-(PYRIDIN-4-YL)PHENYL]BUT-1-YN-1-YL]PYRIMIDINE-2,4-DIAMINE (UCP1063)

6P9Z | pdb_00006p9z

Staphylococcus aureus Dihydrofolate reductase in complex with NADPH and Methotrexate

6PBO | pdb_00006pbo

Staphylococcus aureus Dihydrofolate reductase in complex with NADPH and UCP1232

7MQP | pdb_00007mqp

E. coli dihydrofolate reductase complexed with 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)

7REB | pdb_00007reb

E. coli dihydrofolate reductase complexed with 5-(3-(7-(4-(aminomethyl)phenyl)benzo[d][1,3]dioxol-5-yl)but-1-yn-1-yl)-6-ethylpyrimidine-2,4-diamine (UCP1223)

7REG | pdb_00007reg

DfrA1 complexed with NADPH and 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)

7RGJ | pdb_00007rgj

DfrA1 complexed with NADPH and 5-(3-(7-(4-(aminomethyl)phenyl)benzo[d][1,3]dioxol-5-yl)but-1-yn-1-yl)-6-ethylpyrimidine-2,4-diamine (UCP1223)

7RGK | pdb_00007rgk

DfrA5 complexed with NADPH and 5-(3-(7-(4-(aminomethyl)phenyl)benzo[d][1,3]dioxol-5-yl)but-1-yn-1-yl)-6-ethylpyrimidine-2,4-diamine (UCP1223)

7RGO | pdb_00007rgo

DfrA5 complexed with NADPH and 4'-chloro-3'-(4-(2,4-diamino-6-ethylpyrimidin-5-yl)but-3-yn-2-yl)-[1,1'-biphenyl]-4-carboxamide (UCP1228)

7T7Q | pdb_00007t7q

R-27 In Complex with S. aureus DHFR and alpha-NADPH - Remediated for comparison with tNADPH

7T7S | pdb_00007t7s

R-27 in Complex with S. aureus DHFR and tricyclic-NADPH (tNADPH)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6ND2 | pdb_00006nd2

6P9Z | pdb_00006p9z

6PBO | pdb_00006pbo

7MQP | pdb_00007mqp

7REB | pdb_00007reb

7REG | pdb_00007reg

7RGJ | pdb_00007rgj

7RGK | pdb_00007rgk

7RGO | pdb_00007rgo

7T7Q | pdb_00007t7q

7T7S | pdb_00007t7s