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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zhang, B."

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Search Summary

This query matches 190 Structures.

Refinements

Structure Determination Methodology

experimental (190)

Scientific Name of Source Organism

	Homo sapiens (50)
	Mycobacterium tuberculosis H37Rv (22)
	Mycolicibacterium smegmatis MC2 155 (21)
	Sorghum bicolor (16)
	synthetic construct (8)
	Arabidopsis thaliana (7)
	Plasmodium falciparum 3D7 (7)
	Human respiratory syncytial virus A2 (6)
	Severe acute respiratory syndrome coronavirus 2 (6)
	Tequatrovirus T4 (6)

More...

Taxonomy

	Eukaryota (97)
	Bacteria (71)
	Riboviria (26)
	Duplodnaviria (9)
	other sequences (8)
	Varidnaviria (2)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (156)
	ELECTRON MICROSCOPY (33)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (190)
	DNA (7)
	RNA (7)

Refinement Resolution (Å)

	1.0 - 1.5 (8)
	1.5 - 2.0 (45)
	2.0 - 2.5 (53)
	2.5 - 3.0 (44)
	3.0 - 3.5 (21)
	3.5 - 4.0 (12)
	4.0 - 4.5 (4)
	> 4.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (5)
	2010 - 2014 (16)
	2015 - 2019 (62)
	2020 - 2024 (101)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (23)
	Oxidoreductases (20)
	Isomerases (9)
	Translocases (5)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (34)
	MemProtMD (17)
	mpstruc (15)
	OPM (13)

Symmetry Type

	Asymmetric (122)
	Cyclic (63)
	Dihedral (3)
	Icosahedral (3)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a/b) (17)
	All alpha proteins (7)
	Artifacts (9)
	Alpha and beta proteins (a+b) (3)

AllSelected

1 to 25 of 190 Structures

Page 1 of 8

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1HX8	Download File View File

CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF DROSOPHILA AP180

Mao, Y., Chen, J., Maynard, J.A., Zhang, B., Quiocho, F.A.

(2001) Cell 104: 433-440

Released	2001-02-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Drosophila melanogaster
Macromolecule	SYNAPSE-ENRICHED CLATHRIN ADAPTOR PROTEIN LAP (protein)
Unique Ligands	SO4

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1L3Q	Download File View File

H. rufescens abalone shell Lustrin A consensus repeat, FPGKNVNCTSGE, pH 7.4, 1-H NMR structure

Evans, J.S., Wustman, B.A., Zhang, B., Morse, D.E.

(2002) Biopolymers 63: 358-369

Released	2002-03-15
Method	SOLUTION NMR
Macromolecule	Lustrin A (protein)

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3I9J	Download File View File

Crystal structure of ADP ribosyl cyclase complexed with a substrate analog and a product nicotinamide

Liu, Q., Graeff, R., Kriksunov, I.A., Jiang, H., Zhang, B., Oppenheimer, N., Lin, H., Potter, B.V.L., Lee, H.C., Hao, Q.

(2009) J Biol Chem 284: 27637-27645

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Aplysia californica
Macromolecule	ADP-ribosyl cyclase (protein)
Unique Ligands	AVV, NCA, NFD

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3I9K	Download File View File

Crystal structure of ADP ribosyl cyclase complexed with substrate NAD

Liu, Q., Graeff, R., Kriksunov, I.A., Jiang, H., Zhang, B., Oppenheimer, N., Lin, H., Potter, B.V.L., Lee, H.C., Hao, Q.

(2009) J Biol Chem 284: 27637-27645

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Aplysia californica
Macromolecule	ADP-ribosyl cyclase (protein)
Unique Ligands	NAD

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3I9L	Download File View File

Crystal structure of ADP ribosyl cyclase complexed with N1-cIDPR

Liu, Q., Graeff, R., Kriksunov, I.A., Jiang, H., Zhang, B., Oppenheimer, N., Lin, H., Potter, B.V.L., Lee, H.C., Hao, Q.

(2009) J Biol Chem 284: 27637-27645

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Aplysia californica
Macromolecule	ADP-ribosyl cyclase (protein)
Unique Ligands	N1C

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3I9M	Download File View File

Crystal structure of human CD38 complexed with an analog ara-2'F-ADPR

Liu, Q., Graeff, R., Kriksunov, I.A., Jiang, H., Zhang, B., Oppenheimer, N., Lin, H., Potter, B.V.L., Lee, H.C., Hao, Q.

(2009) J Biol Chem 284: 27637-27645

Released	2009-07-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	AVU

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3I9N	Download File View File

Crystal structure of human CD38 complexed with an analog ribo-2'F-ADP ribose

Liu, Q., Graeff, R., Kriksunov, I.A., Jiang, H., Zhang, B., Oppenheimer, N., Lin, H., Potter, B.V.L., Lee, H.C., Hao, Q.

(2009) J Biol Chem 284: 27637-27645

Released	2009-07-28
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase 1 (protein)
Unique Ligands	AVW

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3R0M	Download File View File

Crystal structure of anti-HIV llama VHH antibody A12

Chen, L., McLellan, J.S., Kwon, Y.D., Schmidt, S., Wu, X., Zhou, T., Yang, Y., Zhang, B., Forsman, A., Weiss, R.A., Verrips, T., Mascola, J., Kwong, P.D.

To be published

Released	2012-03-14
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lama glama
Macromolecule	Llama VHH A12 (protein)
Unique Ligands	SO4

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3RJQ	Download File View File

Crystal structure of anti-HIV llama VHH antibody A12 in complex with C186 gp120

Chen, L., McLellan, J.S., Kwon, Y.D., Schmidt, S., Wu, X., Zhou, T., Yang, Y., Zhang, B., Forsman, A., Weiss, R.A., Verrips, T., Mascola, J., Kwong, P.D.

To be published

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	HIV-1 M:B_HXB2R Lama glama
Macromolecule	C186 gp120 (protein) Llama VHH A12 (protein)
Unique Ligands	NAG

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3TCL	Download File View File

Crystal Structure of HIV-1 Neutralizing Antibody CH04

Louder, R.K., McLellan, J.S., Pancera, M., Yang, Y., Zhang, B., Bonsignori, M., Kwong, P.D.

(2011) Nature 480: 336-343

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.906 Å
Organisms	Homo sapiens
Macromolecule	CH04 Heavy Chain Fab (protein) CH04 Light Chain Fab (protein)
Unique Ligands	IMD

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3V64	Download File View File

Crystal Structure of agrin and LRP4

Zong, Y., Zhang, B., Gu, S., Lee, K., Zhou, J., Yao, G., Figueiedo, D., Perry, K., Mei, L., Jin, R.

(2012) Genes Dev 26: 247-258

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Rattus norvegicus
Macromolecule	Low-density lipoprotein receptor-related protein 4 (protein) agrin (protein)
Unique Ligands	CA, NAG, PO4

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3VBC	Download File View File

Crystal Structure of iL-17 receptor B SEFIR domain

Zhang, B., Liu, C., Li, X., Deng, J.

(2013) J Immunol 190: 2320-2326

Released	2013-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	Interleukin-17 receptor B (protein)

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4GKX	Download File View File

Crystal structure of a carbohydrate-binding domain

Page, R.C., Zheng, C., Nix, J.C., Misra, S., Zhang, B.

(2013) J Biol Chem 288: 20499-20509

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Protein ERGIC-53 (protein)
Unique Ligands	CA, GOL
Unique branched monosaccharides	MAN

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4GKY	Download File View File

Crystal structure of a carbohydrate-binding domain

Page, R.C., Zheng, C., Nix, J.C., Misra, S., Zhang, B.

(2013) J Biol Chem 288: 20499-20509

Released	2013-06-05
Method	X-RAY DIFFRACTION 2.4201 Å
Organisms	Homo sapiens
Macromolecule	Protein ERGIC-53 (protein)
Unique Ligands	CA, GOL, MAN

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4GVJ	Download File View File

Tyk2 (JH1) in complex with adenosine di-phosphate

Liang, J., Abbema, A.V., Bao, L., Barrett, K., Beresini, M., Berezhkovskiy, L., Blair, W., Chang, C., Driscoll, J., Eigenbrot, C., Ghilardi, N., Gibbons, P., Halladay, J., Johnson, A., Kohli, P.B., Lai, Y., Liimatta, M., Mantik, P., Menghrajani, K., Murray, J., Sambrone, A., Shao, Y., Shia, S., Shin, Y., Smith, J., Sohn, S., Stanley, M., Tsui, V., Ultsch, M., Wu, L., Zhang, B., Magnuson, S.

(2013) Eur J Med Chem 67: 175-187

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Homo sapiens
Macromolecule	Non-receptor tyrosine-protein kinase TYK2 (protein)
Unique Ligands	ADP, MG

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4H5S	Download File View File

Complex structure of Necl-2 and CRTAM

Zhang, S., Lu, G., Qi, J., Li, Y., Zhang, Z., Zhang, B., Yan, J., Gao, G.F.

(2013) Structure 21: 1430-1439

Released	2013-08-07
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Cell adhesion molecule 1 (protein) Cytotoxic and regulatory T-cell molecule (protein)

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4IMA	Download File View File

The structure of C436M-hLPYK in complex with Citrate/Mn/ATP/Fru-1,6-BP

Zhang, B., Holyoak, T., Fenton, A.W., Tang, Q.L., Prasannan, C.B., Deng, J.P.

(2013) Biochemistry 52: 466-476

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.954 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase (protein)
Unique Ligands	ADN, EDO, FBP, FLC, MN

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4KQZ	Download File View File

structure of the receptor binding domain (RBD) of MERS-CoV spike

Lu, G., Hu, Y., Wang, Q., Qi, J., Gao, F., Li, Y., Zhang, Y., Zhang, W., Yuan, Y., Bao, J., Zhang, B., Shi, Y., Yan, J., Gao, G.F.

(2013) Nature 500: 227-231

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.514 Å
Organisms	Human betacoronavirus 2c EMC/2012
Macromolecule	S protein (protein)
Unique Ligands	NAG

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4KR0	Download File View File

Complex structure of MERS-CoV spike RBD bound to CD26

Lu, G., Hu, Y., Wang, Q., Qi, J., Gao, F., Li, Y., Zhang, Y., Zhang, W., Yuan, Y., Zhang, B., Shi, Y., Yan, J., Gao, G.F.

(2013) Nature 500: 227-231

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.702 Å
Organisms	Homo sapiens Human betacoronavirus 2c EMC/2012
Macromolecule	Dipeptidyl peptidase 4 (protein) S protein (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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4L1W	Download File View File

Crystal Structuer of Human 3-alpha Hydroxysteroid Dehydrogenase Type 3 in Complex with NADP+ and Progesterone

Zhang, B., Hu, X.-J., Lin, S.-X.

(2014) J Steroid Biochem Mol Biol 141: 135-143

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C2 (protein)
Unique Ligands	NAP, SO4, STR

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4L1X	Download File View File

Crystal Structuer of Human 3-alpha Hydroxysteroid Dehydrogenase Type 3 V54L Mutant in Complex with NADP+ and Progesterone

Zhang, B., Hu, X.-J., Lin, S.-X.

(2014) J Steroid Biochem Mol Biol 141: 135-143

Released	2014-04-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C2 (protein)
Unique Ligands	NAP, SO4, STR

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4M58	Download File View File

Crystal Structure of an transition metal transporter

Yu, Y., Yan, C.Y., Zhang, B., Li, X.L., Gu, J.K.

(2014) Cell Res 24: 267-277

Released	2014-03-26
Method	X-RAY DIFFRACTION 3.21 Å
Organisms	Caldanaerobacter subterraneus subsp. tengcongensis MB4
Macromolecule	Cobalamin biosynthesis protein CbiM (protein)
Unique Ligands	NI

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4NUX	Download File View File

Structure of receptor A

Zhang, B., Han, Y., Deng, J.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1476-1483

Released	2014-05-14
Method	X-RAY DIFFRACTION 2.295 Å
Organisms	Homo sapiens
Macromolecule	Interleukin-17 receptor A (protein)

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4R7A	Download File View File

Crystal Structure of RBBP4 bound to PHF6 peptide

Liu, Z., Li, F., Zhang, B., Li, S., Wu, J., Shi, Y.

(2015) J Biol Chem 290: 6630-6638

Released	2015-01-14
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) PHD finger protein 6 (protein)
Unique Ligands	GOL

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4S1Q	Download File View File

Crystal structure of a VRC01-lineage antibody, 45-VRC01.H03+06.D-001739, in complex with clade A/E HIV-1 gp120 core

Kwon, Y.D., Yang, Y., Zhang, B., Kwong, P.D.

(2015) Cell 161: 470-485

Released	2015-04-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Fab of VRC01 light chain (protein) Fab of VRC01-lineage antibody,45-VRC01.H03+06.D-001739 heavy chain (protein) HIV-1 gp120 core (protein)
Unique Ligands	NAG