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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Zubieta, C."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (7)
	Anas platyrhynchos (6)
	Saccharomyces cerevisiae (6)
	Influenza A virus (A/California/04/2009(H1N1)) (5)
	Trypanosoma brucei brucei (4)
	synthetic construct (4)
	Influenza A virus (3)
	Mycobacterium tuberculosis H37Rv (3)
	Trichoplusia ni (3)
	Saccharomyces cerevisiae S288C (2)

More...

Taxonomy

	Eukaryota (25)
	Riboviria (8)
	other sequences (4)
	Bacteria (3)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	ELECTRON MICROSCOPY (12)

Polymer Entity Type

	Protein (36)
	RNA (12)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (10)
	2.5 - 3.0 (9)
	3.0 - 3.5 (4)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)

Release Date

	2005 - 2009 (4)
	2010 - 2014 (14)
	2015 - 2019 (5)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (21)
	Transferases (6)
	Ligases (4)
	Isomerases (3)

Symmetry Type

	Asymmetric (31)
	Cyclic (5)

SCOP Classification

	Alpha and beta proteins (a/b) (5)
	All alpha proteins (1)
	All beta proteins (1)
	Artifacts (1)

AllSelected

1 to 25 of 36 Structures

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2Q8K	Download File View File

The crystal structure of Ebp1

Kowalinski, E., Bange, G., Wild, K., Sinning, I.

(2007) FEBS Lett 581: 4450-4454

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Proliferation-associated protein 2G4 (protein)
Unique Ligands	GOL, SO4

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2VVO	Download File View File

Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with alpha d-allose 6-phosphate

Roos, A.K., Mariano, S., Kowalinski, E., Salmon, L., Mowbray, S.L.

(2008) J Mol Biol 382: 667

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	A6P

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2VVP	Download File View File

Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with its substrates ribose 5-phosphate and ribulose 5-phosphate

Kowalinski, E., Roos, A.K., Mariano, S., Salmon, L., Mowbray, S.L.

(2008) J Mol Biol 382: 667

Released	2008-07-01
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	5RP, R52

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2VVQ	Download File View File

Crystal structure of Mycobacterium tuberculosis ribose-5-phosphate isomerase B in complex with the inhibitor 5-deoxy-5-phospho-D- ribonate

Kowalinski, E., Roos, A.K., Mariano, S., Salmon, L., Mowbray, S.L.

(2008) J Mol Biol 382: 667

Released	2008-07-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	RIBOSE-5-PHOSPHATE ISOMERASE B (protein)
Unique Ligands	R10, SO4

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4A2P	Download File View File

Structure of duck RIG-I helicase domain

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)

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4A2Q	Download File View File

Structure of duck RIG-I tandem CARDs and helicase domain

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)

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4A2V	Download File View File

Structure of duck RIG-I C-terminal domain (CTD)

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)
Unique Ligands	GOL, ZN

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4A2W	Download File View File

Structure of full-length duck RIG-I

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Anas platyrhynchos
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein)

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4A2X	Download File View File

Structure of duck RIG-I C-terminal domain (CTD) with 14-mer dSRNA

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423-435

Released	2011-10-19
Method	X-RAY DIFFRACTION 4 Å
Organisms	Anas platyrhynchos synthetic construct
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein) 5'-R(CPGPCPGPUPUPGPUPUPCPUPCPCPCP)-3' (nucleic acid) 5'-R(GPGPGPAPGPAPAPCPAPAPCPGPCPGP)-3' (nucleic acid)
Unique Ligands	ZN

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4A36	Download File View File

Structure of duck RIG-I helicase domain bound to 19-mer dsRNA and ATP transition state analogue

Kowalinski, E., Lunardi, T., McCarthy, A.A., Cusack, S.

(2011) Cell 147: 423

Released	2011-10-19
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Anas platyrhynchos synthetic construct
Macromolecule	RETINOIC ACID INDUCIBLE PROTEIN I (protein) 5'-R(GPCPAPUPGPCPGPAPCPCPUPCPUPGP UPUPUPGPA)-3' (nucleic acid) 5'-R(UPCPAPAPAPCPAPGPAPGPGPUPCPGP CPAPUPGPC)-3' (nucleic acid)
Unique Ligands	ADP, AF3, MG

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4AVG	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with diketo compound 2

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Influenza A virus
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	MN, SL6

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4AVL	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with dTMP

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H.J., Ruigrok, R.W.H., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Influenza A virus
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	MN, TMP

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4AVQ	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Influenza A virus
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	MG, MN

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4AWF	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with 2 4-dioxo-4-phenylbutanoic acid DPBA

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	MN, XI7

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4AWG	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with diketo compound 3

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	CI3, MN, SO4

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4AWH	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with rUMP

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	MN, U5P

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4AWK	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with diketo compound 1

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	CI1, MN

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4AWM	Download File View File

Influenza strain pH1N1 2009 polymerase subunit PA endonuclease in complex with (-)-epigallocatechin gallate from green tea

Kowalinski, E., Zubieta, C., Wolkerstorfer, A., Szolar, O.H., Ruigrok, R.W., Cusack, S.

(2012) PLoS Pathog 8: 2831

Released	2012-08-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Influenza A virus (A/California/04/2009(H1N1))
Macromolecule	POLYMERASE PA (protein)
Unique Ligands	KDH, MN

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4ZKD	Download File View File

Crystal structure of the S. cerevisiae Ski7 GTPase-like domain, bound to GDP and inorganic phosphate.

Kowalinski, E., Conti, E.

(2015) Structure 23: 1336-1343

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.181 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Superkiller protein 7 (protein)
Unique Ligands	GDP, MG, PO4

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4ZKE	Download File View File

Crystal structure of the S. cerevisiae Ski7 GTPase-like domain, bound to GTP.

Kowalinski, E., Conti, E.

(2015) Structure 23: 1336-1343

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.251 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Superkiller protein 7 (protein)
Unique Ligands	GTP, MG, NA, PGE

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5JEA	Download File View File

Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA

Kowalinski, E., Ebert, J., Stegmann, E., Conti, E.

(2016) Mol Cell 63: 125-134

Released	2016-07-13
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharomyces cerevisiae S288C Tequatrovirus T4 synthetic construct
Macromolecule	Unique protein chains: 11 Unique nucleic acid chains: 1
Unique Ligands	MPD, NA, ZN

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5MC6	Download File View File

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Schmidt, C., Kowalinski, E., Shanmuganathan, V., Defenouillere, Q., Braunger, K., Heuer, A., Pech, M., Namane, A., Berninghausen, O., Fromont-Racine, M., Jacquier, A., Conti, E., Becker, T., Beckmann, R.

(2016) Science 354: 1431-1433

Released	2017-01-18
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 79 Unique nucleic acid chains: 7

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6FLM	Download File View File

Crystal structure of the human TRIM25 PRYSPRY domain

Cusack, S., Kowalinski, E.

(2018) Nat Commun 9: 1820-1820

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.009 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin/ISG15 ligase TRIM25 (protein)
Unique Ligands	CL, SO4

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8AW3	Download File View File

Cryo-EM structure of the Tb ADAT2/3 deaminase in complex with tRNA

Dolce, L.G., Tengo, L., Weis, F., Kowalinski, E.

(2022) Nat Commun 13: 6737-6737

Released	2022-11-16
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Trypanosoma brucei Trypanosoma brucei brucei
Macromolecule	Deaminase, putative (protein) RNA (75-MER) (nucleic acid)
Unique Ligands	ZN

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8CDP	Download File View File

Cryo-EM structure of the RESC1-RESC2 complex

Dolce, L.G., Weis, F., Kowalinski, E.

(2023) Nucleic Acids Res 51: 4602-4612

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	Guide_RNA_associated_protein_-_putative (protein) Mitochondrial guide RNA binding complex subunit 2 (protein)

1 to 25 of 36 Structures

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