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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Abergel, R.J."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Agrobacterium fabrum str. C58 (11)
	Agrobacterium tumefaciens (10)
	Allorhizobium ampelinum S4 (6)
	Drosophila melanogaster (4)

Taxonomy

	Bacteria (27)
	Eukaryota (4)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (15)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2015 - 2019 (9)
	2020 - 2024 (22)

Enzyme Classification Name

Hydrolases (4)

Symmetry Type

	Asymmetric (31)
	Cyclic (1)

AllSelected

1 to 25 of 31 Structures

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4RA1 \| pdb_00004ra1	Download File View File

PBP AccA from A. tumefaciens C58 in complex with D-Glucose-2-phosphate

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	ALX, BNX, EDO, PEG

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4ZE8 \| pdb_00004ze8	Download File View File

PBP AccA from A. tumefaciens C58

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	EDO, GOL, PEG, SO4

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4ZE9 \| pdb_00004ze9	Download File View File

Se-PBP AccA from A. tumefaciens C58 in complex with agrocinopine A

El Sahili, A., Guimaraes, B.G., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	ARA
Unique branched monosaccharides	4GL, TT7

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4ZEB \| pdb_00004zeb	Download File View File

PBP AccA from A. tumefaciens C58 in complex with agrocinopine A

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	ARA, EDO, PEG
Unique branched monosaccharides	4GL, TT7

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4ZEC \| pdb_00004zec	Download File View File

PBP AccA from A. tumefaciens C58 in complex with agrocin 84

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	C84, EDO, GOL, PEG

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4ZED \| pdb_00004zed	Download File View File

PBP AccA from A. tumefaciens C58 in complex with agrocinopine-3'-O-benzoate

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	AGW, EDO

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4ZEI \| pdb_00004zei	Download File View File

PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-phosphate

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	EDO, LAO

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4ZEK \| pdb_00004zek	Download File View File

PBP AccA from A. tumefaciens C58 in complex with L-arabinose-2-isopropylphosphate

El Sahili, A., Morera, S.

(2015) PLoS Pathog 11: e1005071-e1005071

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (AGROCINOPINES A AND B) (protein)
Unique Ligands	EDO, LAH, PEG, TOE

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6I7W \| pdb_00006i7w	Download File View File

Structure of the periplasmic binding protein (PBP) AccA in complex with 2-glucose-2-O-lactic acid phosphate (G2LP) from Agrobacterium fabrum C58

Morera, S., Vigouroux, A., El Sahili, A.

(2019) Org Biomol Chem 17: 1090-1096

Released	2019-01-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	ABC transporter, substrate binding protein (Agrocinopines A and B) (protein)
Unique Ligands	H6Q, H6Z, NA

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7NSX \| pdb_00007nsx	Download File View File

Drosophila PGRP-LB wild-type

Orlans, J., Aller, P., Da Silva, P.

(2021) Int J Mol Sci 22:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform A of Peptidoglycan-recognition protein LB (protein)
Unique Ligands	ZN

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7NSY \| pdb_00007nsy	Download File View File

Drosophila PGRP-LB C160S mutant

Orlans, J., Aller, P., Da Silva, P.

(2021) Int J Mol Sci 22:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform A of Peptidoglycan-recognition protein LB (protein)

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7NSZ \| pdb_00007nsz	Download File View File

Drosophila PGRP-LB Y78F mutant

Orlans, J., Aller, P., Da Silva, P.

(2021) Int J Mol Sci 22:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform A of Peptidoglycan-recognition protein LB (protein)
Unique Ligands	EPE, NA, ZN

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7NT0 \| pdb_00007nt0	Download File View File

Drosophila PGRP-LB Y78F mutant in complex with tracheal cytotoxin (TCT)

Orlans, J., Aller, P., Da Silva, P.

(2021) Int J Mol Sci 22:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Drosophila melanogaster
Macromolecule	Isoform A of Peptidoglycan-recognition protein LB (protein)
Unique Ligands	MLD, ZN

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8C6R \| pdb_00008c6r	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.884 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, PEG, PGE

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8C6U \| pdb_00008c6u	Download File View File

PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.843 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ACT, EDO, PEG

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8C6W \| pdb_00008c6w	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 1

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)

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8C6Y \| pdb_00008c6y	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 2

Morera, S., Vigouroux, A., legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO

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8C75 \| pdb_00008c75	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 3

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.673 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, NA, PEG, PGE

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8CAW \| pdb_00008caw	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with agrocin84

Morera, S., Vigouroux, A., El Sahili, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.256 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	C84, EDO, UKU

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8CAY \| pdb_00008cay	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with Agrocinopine D-like

Morera, S., Vigouroux, A., Siragu, S.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.626 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	NA, PEG, Y45, Y4H

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8CB9 \| pdb_00008cb9	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with D-Glucose-2-phosphate

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX

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8CDO \| pdb_00008cdo	Download File View File

PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX, EDO, PEG, PG4, PGE
Unique branched monosaccharides	FRU, GLC

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8CH1 \| pdb_00008ch1	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine A

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, LAO, PEG, VDF
Unique branched monosaccharides	FRU, GLC

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8CH2 \| pdb_00008ch2	Download File View File

PBP AccA from A. vitis S4 in complex with L-arabinose-2-phosphate (A2P)

Morera, S., Deicsics, G., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.404 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	AccA (protein)
Unique Ligands	EDO, LAO, VDF

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8CH3 \| pdb_00008ch3	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX
Unique branched monosaccharides	FRU, GLC

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

4RA1 | pdb_00004ra1

4ZE8 | pdb_00004ze8

4ZE9 | pdb_00004ze9

4ZEB | pdb_00004zeb

4ZEC | pdb_00004zec

4ZED | pdb_00004zed

4ZEI | pdb_00004zei

4ZEK | pdb_00004zek

6I7W | pdb_00006i7w

7NSX | pdb_00007nsx

7NSY | pdb_00007nsy

7NSZ | pdb_00007nsz

7NT0 | pdb_00007nt0

8C6R | pdb_00008c6r

8C6U | pdb_00008c6u

8C6W | pdb_00008c6w

8C6Y | pdb_00008c6y

8C75 | pdb_00008c75

8CAW | pdb_00008caw

8CAY | pdb_00008cay

8CB9 | pdb_00008cb9

8CDO | pdb_00008cdo

8CH1 | pdb_00008ch1

8CH2 | pdb_00008ch2

8CH3 | pdb_00008ch3