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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Alahuhta, M."

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Search Summary

This query matches 62 Structures.

Refinements

Structure Determination Methodology

experimental (62)

Scientific Name of Source Organism

	Trypanosoma brucei brucei (11)
	Caldicellulosiruptor bescii DSM 6725 (10)
	Arabidopsis thaliana (4)
	Leishmania mexicana (4)
	Acetivibrio thermocellus ATCC 27405 (3)
	Bdellovibrio bacteriovorus HD100 (3)
	Caldicellulosiruptor bescii (3)
	Serratia marcescens (3)
	Acetivibrio thermocellus (2)
	Acidothermus cellulolyticus (2)

More...

Taxonomy

	Bacteria (39)
	Eukaryota (23)

Experimental Method

X-RAY DIFFRACTION (62)

Polymer Entity Type

Protein (62)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (10)
	1.5 - 2.0 (33)
	2.0 - 2.5 (14)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (12)
	2010 - 2014 (18)
	2015 - 2019 (23)
	2020 - 2024 (9)

Enzyme Classification Name

	Isomerases (15)
	Hydrolases (10)
	Lyases (10)
	Transferases (6)
	Oxidoreductases (5)

Symmetry Type

	Asymmetric (44)
	Cyclic (16)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (20)
	Artifacts (6)
	All alpha proteins (4)
	All beta proteins (2)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 62 Structures

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2J24 \| pdb_00002j24	Download File View File

The functional role of the conserved active site proline of triosephosphate isomerase

Casteleijn, M.G., Alahuhta, M., Groebel, K., El-Sayed, I., Augustyns, K., Lambeir, A.M., Neubauer, P., Wierenga, R.K.

(2006) Biochemistry 45: 15483

Released	2007-01-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE, GLYCOSOMAL (protein)

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2J27 \| pdb_00002j27	Download File View File

The functional role of the conserved active site proline of triosephosphate isomerase.

Casteleijn, M.G., Alahuhta, M., Groebel, K., El-Sayed, I., Augustyns, K., Lambeir, A.M., Neubauer, P., Wierenga, R.K.

(2006) Biochemistry 45: 15483

Released	2007-01-02
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE GLYCOSOMAL (protein)
Unique Ligands	PGA, SO4

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2V0T \| pdb_00002v0t	Download File View File

The A178L mutation in the C-terminal hinge of the flexible loop-6 of triosephosphate isomerase (TIM) induces a more closed conformation of this hinge region in dimeric and monomeric TIM

Alahuhta, M., Casteleijn, M.G., Neubauer, P., Wierenga, R.K.

(2008) Acta Crystallogr D Biol Crystallogr 64: 178-188

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE GLYCOSOMAL (protein)
Unique Ligands	EPE, SO4

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2V2C \| pdb_00002v2c	Download File View File

The A178L mutation in the C-terminal hinge of the flexible loop-6 of triosephosphate isomerase (TIM) induces a more closed conformation of this hinge region in dimeric and monomeric TIM

Alahuhta, M., Casteleijn, M.G., Neubauer, P., Wierenga, R.K.

(2008) Acta Crystallogr D Biol Crystallogr 64: 178

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE GLYCOSOMAL (protein)
Unique Ligands	PGA, SO4

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2V2D \| pdb_00002v2d	Download File View File

The A178L mutation in the C-terminal hinge of the flexible loop-6 of triosephosphate isomerase (TIM) induces a more closed conformation of this hinge region in dimeric and monomeric TIM

Alahuhta, M., Casteleijn, M.G., Neubauer, P., Wierenga, R.K.

(2008) Acta Crystallogr D Biol Crystallogr 64: 178

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE GLYCOSOMAL (protein)
Unique Ligands	PO4

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2V2H \| pdb_00002v2h	Download File View File

The A178L mutation in the C-terminal hinge of the flexible loop-6 of triosephosphate isomerase (TIM) induces a more closed conformation of this hinge region in dimeric and monomeric TIM

Alahuhta, M., Casteleijn, M.G., Neubauer, P., Wierenga, R.K.

(2008) Acta Crystallogr D Biol Crystallogr 64: 178

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.18 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE GLYCOSOMAL (protein)
Unique Ligands	CL, PGA

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2VEI \| pdb_00002vei	Download File View File

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Alahuhta, M., Salin, M., Casteleijn, M.G., Kemmer, C., El-Sayed, I., Augustyns, K., Neubauer, P., Wierenga, R.K.

(2008) Protein Eng Des Sel 21: 257

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	SO4

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2VEK \| pdb_00002vek	Download File View File

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Alahuhta, M., Salin, M., Casteleijn, M.G., Kemmer, C., El-Sayed, I., Augustyns, K., Neubauer, P., Wierenga, R.K.

(2008) Protein Eng Des Sel 21: 257

Released	2008-02-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	ASF, CIT, TBU

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2VEL \| pdb_00002vel	Download File View File

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties.

Alahuhta, M., Salin, M., Casteleijn, M.G., Kemmer, C., El-Sayed, I., Augustyns, K., Neubauer, P., Wierenga, R.K.

(2008) Protein Eng Des Sel 21: 257

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	CL, PGA

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2VEM \| pdb_00002vem	Download File View File

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Alahuhta, M., Salin, M., Casteleijn, M.G., Kemmer, C., El-Sayed, I., Augustyns, K., Neubauer, P., Wierenga, R.K.

(2008) Protein Eng Des Sel 21: 257

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	BBR, TBU

Explore in 3D

2VEN \| pdb_00002ven	Download File View File

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Alahuhta, M., Salin, M., Casteleijn, M.G., Kemmer, C., El-Sayed, I., Augustyns, K., Neubauer, P., Wierenga, R.K.

(2008) Protein Eng Des Sel 21: 257

Released	2008-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	GLYCOSOMAL TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	CIT

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2VXN \| pdb_00002vxn	Download File View File

E65Q-TIM complexed with phosphoglycolohydroxamate at 0.82 A resolution

Alahuhta, M., Wierenga, R.K.

(2010) Proteins 78: 1878

Released	2009-07-14
Method	X-RAY DIFFRACTION 0.82 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	ACT, GOL, PGA, PGH

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2Y61 \| pdb_00002y61	Download File View File

Crystal structure of Leishmanial E65Q-TIM complexed with S-Glycidol phosphate

Venkatesan, R., Alahuhta, M., Pihko, P.M., Wierenga, R.K.

(2011) Protein Sci 20: 1387-1397

Released	2011-12-14
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE SYNONYM TRIOSE-PHOSPHATE ISOMERASE, TIM (protein)
Unique Ligands	1GP, G3P, GOL

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2Y62 \| pdb_00002y62	Download File View File

Crystal structure of Leishmanial E65Q-TIM complexed with R-Glycidol phosphate

Venkatesan, R., Alahuhta, M., Pihko, P.M., Wierenga, R.K.

(2011) Protein Sci 20: 1387

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE SYNONYM TRIOSE-PHOSPHATE ISOMERASE, TIM (protein)
Unique Ligands	1GP, G3P, GOL

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2Y63 \| pdb_00002y63	Download File View File

Crystal structure of Leishmanial E65Q-TIM complexed with Bromohydroxyacetone phosphate

Venkatesan, R., Alahuhta, M., Pihko, P.M., Wierenga, R.K.

(2011) Protein Sci 20: 1387

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	BBR

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3K4Z \| pdb_00003k4z	Download File View File

Crystal Structure of the Cellulosomal CBM4 from Clostridium thermocellum Cellulase CbhA

Alahuhta, P.M., Xu, Q., Himmel, M.E., Lunin, V.V.

(2010) J Mol Biology 402: 374-387

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Acetivibrio thermocellus JW20
Macromolecule	Glycoside hydrolase family 9 (protein)
Unique Ligands	MG, NI, OXL, XGP
Unique branched monosaccharides	BGC

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3MPC \| pdb_00003mpc	Download File View File

The crystal structure of a Fn3-like protein from Clostridium thermocellum

Alahuhta, M.P., Xu, Q., Brunecky, R., Lunin, V.V.

(2010) Acta Crystallogr Sect F Struct Biol Cryst Commun 66: 878-880

Released	2010-08-11
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Fn3-like protein (protein)
Unique Ligands	SO4

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3P6B \| pdb_00003p6b	Download File View File

The crystal structure of CelK CBM4 from Clostridium thermocellum

Alahuhta, P.M., Luo, Y., Lunin, V.V.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 527-530

Released	2011-08-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acetivibrio thermocellus
Macromolecule	Cellulose 1,4-beta-cellobiosidase (protein)
Unique Ligands	ACT, CA, GOL, SO4

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3PDD \| pdb_00003pdd	Download File View File

Structures of Clostridium thermocellum CbhA fibronectin(III)-like modules

Alahuhta, P.M., Lunin, V.V.

(2012) Acta Crystallogr D Biol Crystallogr 68: 292-299

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Glycoside hydrolase, family 9 (protein)
Unique Ligands	CA, CL

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3PDG \| pdb_00003pdg	Download File View File

Structures of Clostridium thermocellum CbhA fibronectin(III)-like modules

Alahuhta, P.M., Lunin, V.V.

(2012) Acta Crystallogr D Biol Crystallogr 68: 292-299

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Acetivibrio thermocellus ATCC 27405
Macromolecule	Fibronectin(III)-like module (protein)
Unique Ligands	NA

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3PE9 \| pdb_00003pe9	Download File View File

Structures of Clostridium thermocellum CbhA fibronectin(III)-like modules

Alahuhta, P.M., Lunin, V.V.

(2012) Acta Crystallogr D Biol Crystallogr 68: 292-299

Released	2011-11-23
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Acetivibrio thermocellus
Macromolecule	Fibronectin(III)-like module (protein)
Unique Ligands	IOD

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3T9G \| pdb_00003t9g	Download File View File

The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii

Alahuhta, P.M., Lunin, V.V.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1498-1500

Released	2012-05-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Caldicellulosiruptor bescii
Macromolecule	Pectate lyase (protein)
Unique Ligands	ACT, CA, CL, EDO, GOL, MPD, MRD, NA, PO4

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4DOD \| pdb_00004dod	Download File View File

The structure of Cbescii CelA GH9 module

Alahuhta, P.M., Lunin, V.V.

(2013) Science 342: 1513-1516

Released	2013-02-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Caldicellulosiruptor bescii
Macromolecule	1,4-beta-glucanase (protein)
Unique Ligands	CA, DIO, EDO, GOL, SO4

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4DOE \| pdb_00004doe	Download File View File

The liganded structure of Cbescii CelA GH9 module

Alahuhta, P.M., Lunin, V.V.

(2013) Science 342: 1513-1516

Released	2013-02-20
Method	X-RAY DIFFRACTION 1.561 Å
Organisms	Caldicellulosiruptor bescii
Macromolecule	1,4-beta-glucanase (protein)
Unique Ligands	CA, DIO, EDO, GOL, SO4
Unique branched monosaccharides	BGC, GLC

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4EL8 \| pdb_00004el8	Download File View File

The unliganded structure of C.bescii CelA GH48 module

Alahuhta, P.M., Lunin, V.V.

(2013) Science 342: 1513-1516

Released	2013-03-20
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Caldicellulosiruptor bescii DSM 6725
Macromolecule	Glycoside hydrolase family 48 (protein)
Unique Ligands	CA, EDO, SO4

1 to 25 of 62 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2J24 | pdb_00002j24

2J27 | pdb_00002j27

2V0T | pdb_00002v0t

2V2C | pdb_00002v2c

2V2D | pdb_00002v2d

2V2H | pdb_00002v2h

2VEI | pdb_00002vei

2VEK | pdb_00002vek

2VEL | pdb_00002vel

2VEM | pdb_00002vem

2VEN | pdb_00002ven

2VXN | pdb_00002vxn

2Y61 | pdb_00002y61

2Y62 | pdb_00002y62

2Y63 | pdb_00002y63

3K4Z | pdb_00003k4z

3MPC | pdb_00003mpc

3P6B | pdb_00003p6b

3PDD | pdb_00003pdd

3PDG | pdb_00003pdg

3PE9 | pdb_00003pe9

3T9G | pdb_00003t9g

4DOD | pdb_00004dod

4DOE | pdb_00004doe

4EL8 | pdb_00004el8