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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Antson, A."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Bacteroides phage crAss001 (7)
	Haloferax tailed virus 1 (5)
	Bovine papillomavirus (1)

Taxonomy

	Duplodnaviria (12)
	Monodnaviria (1)

Experimental Method

ELECTRON MICROSCOPY (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (3)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (12)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Cyclic (10)
	Asymmetric (2)
	Icosahedral (1)

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1 to 13 of 13 Structures

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5A9K \| pdb_00005a9k	Download File View File

Structural basis for DNA strand separation by a hexameric replicative helicase

Chaban, Y., Stead, J.A., Ryzhenkova, K., Whelan, F., Lamber, K., Antson, F., Sanders, C.M., Orlova, E.V.

(2015) Nucleic Acids Res 43: 8551

Released	2015-08-26
Method	ELECTRON MICROSCOPY 19 Å
Organisms	Bovine papillomavirus
Macromolecule	REPLICATION PROTEIN E1 (protein)
Unique Ligands	MG, PO4

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7QOF \| pdb_00007qof	Download File View File

Icosahedral capsid of the phicrAss001 virion

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.01 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Auxiliary capsid protein gp36 (protein) Head fiber dimer protein gp29 (protein) Head fiber trimer protein gp21 (protein) Major capsid protein gp32 (protein)
Unique Ligands	MG

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7QOG \| pdb_00007qog	Download File View File

Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.09 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Cargo protein 1 gp45 (protein) Portal protein gp20 (protein) Ring protein 1 gp43 (protein) Ring protein 2 gp40 (protein)

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7QOH \| pdb_00007qoh	Download File View File

Unique vertex of the phicrAss001 virion with C5 symmetry imposed

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.32 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Auxiliary capsid protein gp36 (protein) Head fiber trimer protein gp21 (protein) Major capsid protein gp32 (protein) Portal protein gp20 (protein) Portal vertex capsid protein gp57 (protein)
Unique Ligands	MG

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7QOI \| pdb_00007qoi	Download File View File

Unique vertex of the phicrAss001 virion

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.62 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Unique protein chains: 8
Unique Ligands	MG

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7QOJ \| pdb_00007qoj	Download File View File

Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.21 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Unique protein chains: 9
Unique Ligands	MG

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7QOK \| pdb_00007qok	Download File View File

Tail muzzle assembly of the phicrAss001 virion with C6 symmetry imposed

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.38 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Muzzle bound helix (protein) Muzzle protein gp44 (protein) Ring protein 4/5 gp34 (protein)
Unique Ligands	MG

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7QOL \| pdb_00007qol	Download File View File

Tail assembly of the phicrAss001 virion with C6 symmetry imposed

Bayfield, O.W., Shkoporov, A.N., Yutin, N., Khokhlova, E.V., Smith, J.L.R., Hawkins, D.E.D.P., Koonin, E.V., Hill, C., Antson, A.A.

(2023) Nature 617: 409-416

Released	2023-03-29
Method	ELECTRON MICROSCOPY 3.33 Å
Organisms	Bacteroides phage crAss001
Macromolecule	Unique protein chains: 11
Unique Ligands	MG

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8QPG \| pdb_00008qpg	Download File View File

Turret of Haloferax tailed virus 1

Zhang, D., Daum, B., Isupov, M.N., McLaren, M.

To be published

Released	2024-10-09
Method	ELECTRON MICROSCOPY 2.36 Å
Organisms	Haloferax tailed virus 1
Macromolecule	Prokaryotic polysaccharide deacetylase (protein) gp30 (protein)
Unique Ligands	MG, ZN

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8QPQ \| pdb_00008qpq	Download File View File

C1 turret to capsid interface of full Haloferax tailed virus 1 adjacent to the portal-capsid interface.

Zhang, D., Daum, B., Isupov, M.N., McLaren, M.

To be published

Released	2024-10-09
Method	ELECTRON MICROSCOPY 2.7 Å
Organisms	Haloferax tailed virus 1
Macromolecule	HK97 gp5-like major capsid protein (protein) Prokaryotic polysaccharide deacetylase (protein) gp30 (protein)
Unique Ligands	MG, ZN

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8QQN \| pdb_00008qqn	Download File View File

Portal protein of full Haloferax tailed virus 1.

Zhang, D., Daum, B., Isupov, M.N., McLaren, M.

To be published

Released	2024-10-16
Method	ELECTRON MICROSCOPY 2.342 Å
Organisms	Haloferax tailed virus 1
Macromolecule	HK97 gp6-like/SPP1 gp15-like head-tail connector (protein) Portal protein (protein)
Unique Ligands	MG

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8QSI \| pdb_00008qsi	Download File View File

Portal protein of empty Haloferax tailed virus 1.

Zhang, D., Daum, B., Isupov, M.N., McLaren, M.

To be published

Released	2024-10-23
Method	ELECTRON MICROSCOPY 2.75 Å
Organisms	Haloferax tailed virus 1
Macromolecule	HK97 gp6-like/SPP1 gp15-like head-tail connector (protein) Portal protein (protein)
Unique Ligands	MG

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8QSY \| pdb_00008qsy	Download File View File

Portal capsid interface of full Haloferax tailed virus 1.

Zhang, D., Daum, B., Isupov, M.N., McLaren, M.

To be published

Released	2024-10-23
Method	ELECTRON MICROSCOPY 2.68 Å
Organisms	Haloferax tailed virus 1
Macromolecule	Capsid stabilization protein (protein) HK97 gp5-like major capsid protein (protein) HK97 gp6-like/SPP1 gp15-like head-tail connector (protein) Hypothetical protein gp21 (protein) Portal protein (protein)
Unique Ligands	K, MG

1 to 13 of 13 Structures

Page 1 of 1

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

5A9K | pdb_00005a9k

Structural basis for DNA strand separation by a hexameric replicative helicase

7QOF | pdb_00007qof

Icosahedral capsid of the phicrAss001 virion

7QOG | pdb_00007qog

Portal protein assembly of the phicrAss001 virion with C12 symmetry imposed

7QOH | pdb_00007qoh

Unique vertex of the phicrAss001 virion with C5 symmetry imposed

7QOI | pdb_00007qoi

Unique vertex of the phicrAss001 virion

7QOJ | pdb_00007qoj

Tail barrel assembly of the phicrAss001 virion with C12 symmetry imposed

7QOK | pdb_00007qok

Tail muzzle assembly of the phicrAss001 virion with C6 symmetry imposed

7QOL | pdb_00007qol

Tail assembly of the phicrAss001 virion with C6 symmetry imposed

8QPG | pdb_00008qpg

Turret of Haloferax tailed virus 1

8QPQ | pdb_00008qpq

C1 turret to capsid interface of full Haloferax tailed virus 1 adjacent to the portal-capsid interface.

8QQN | pdb_00008qqn

Portal protein of full Haloferax tailed virus 1.

8QSI | pdb_00008qsi

Portal protein of empty Haloferax tailed virus 1.

8QSY | pdb_00008qsy

Portal capsid interface of full Haloferax tailed virus 1.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

5A9K | pdb_00005a9k

7QOF | pdb_00007qof

7QOG | pdb_00007qog

7QOH | pdb_00007qoh

7QOI | pdb_00007qoi

7QOJ | pdb_00007qoj

7QOK | pdb_00007qok

7QOL | pdb_00007qol

8QPG | pdb_00008qpg

8QPQ | pdb_00008qpq

8QQN | pdb_00008qqn

8QSI | pdb_00008qsi

8QSY | pdb_00008qsy