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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Citation Author = "Bibi, S."

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This query matches 32 Structures.

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7NEG	Download File View File

Crystal structure of the N501Y mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 Fab

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2201

Released	2021-03-03
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Antibody COVOX-269 Fab heavy chain (protein) Antibody COVOX-269 Fab light chain (protein) Surface glycoprotein (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	FUC, NAG

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7NEH	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-269 Fab

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2201

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-269 Fab heavy chain (protein) COVOX-269 fab light chain (protein) Spike glycoprotein (protein)
Unique Ligands	CL, EDO, NO3, PEG, SO4
Unique branched monosaccharides	FUC, NAG

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7NX6	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab Heavy chain (protein) COVOX-222 Fab light chain (protein) EY6A Fab heavy chain (protein) EY6A Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CL, GOL, NAG, SO4

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7NX7	Download File View File

Crystal structure of the K417N mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab heavy chain (protein) COVOX-222 Fab light chain (protein) EY6A Fab heavy chain (protein) EY6A Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CIT, CL, GOL, NAG, SO4

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7NX8	Download File View File

Crystal structure of the K417T mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab heavy chain (protein) COVOX-222 Fab light chain (protein) EY6A Fab heavy chain (protein) EY6A Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CIT, CL, GOL, NAG, PEG, SO4

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7NX9	Download File View File

Crystal structure of the N501Y mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab heavy chain (protein) COVOX-222 Fab light chain (protein) EY6A Fab heavy chain (protein) EY6A Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CL, GOL, NAG, PEG, SO4

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7NXA	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 B.1.351 variant Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab heavy chain (protein) COVOX-222 Fab light chain (protein) EY6A Fab heavy chain (protein) EY6A Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	GOL, NAG, PEG, SO4

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7NXB	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 P.1 variant Spike glycoprotein in complex with COVOX-222 and EY6A Fabs

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab heavy chain (protein) COVOX-222 Fab light chain (protein) EY6A Fab heavy chain (protein) EY6A Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	GOL, NAG, PEG, SO4

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7NXC	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 P.1 variant Spike glycoprotein in complex with ACE2

Zhou, D., Ren, J., Stuart, D.

(2021) Cell 184: 2939

Released	2021-04-07
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7OR9	Download File View File

Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-222 and COVOX-278 Fabs

Zhou, D., Ren, J., Stuart, D.I.

(2021) Cell 184: 4220-4236.e13

Released	2021-07-07
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-222 Fab heavy chain (protein) COVOX-222 Fab light chain (protein) COVOX-278 Fab heavy chain (protein) COVOX-278 Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CL, GOL, PG4
Unique branched monosaccharides	FUC, NAG

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7ORA	Download File View File

Crystal structure of the T478K mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-45 and COVOX-253 Fabs

Zhou, D., Ren, J., Stuart, D.I.

(2021) Cell 184: 4220-4236.e13

Released	2021-07-07
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-253 Fab heavy chain (protein) COVOX-253 Fab light chain (protein) COVOX-45 Fab heavy chain (protein) COVOX-45 Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	CL, GOL
Unique branched monosaccharides	FUC, NAG

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7ORB	Download File View File

Crystal structure of the L452R mutant receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with COVOX-75 and COVOX-253 Fabs

Zhou, D., Ren, J., Stuart, D.I.

(2021) Cell 184: 4220-4236.e13

Released	2021-07-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-253 Fab heavy chain (protein) COVOX-253 Fab light chain (protein) COVOX-75 Fab heavy chain (protein) COVOX-75 Fab light chain (protein) Spike protein S1 (protein)
Unique Ligands	BTB, CL, GOL, PEG, PO4, TRS
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7ZF3	Download File View File

SARS-CoV-2 Omicron RBD in complex with Omi-3 and EY6A Fabs

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	EY6A heavy chain (protein) EY6A light chain (protein) Omi-3 heavy chain (protein) Omi-3 light chain (protein) Spike protein S1 (protein)
Unique Ligands	GOL, IPA

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7ZF4	Download File View File

SARS-CoV-2 Omicron RBD in complex with Omi-9 Fab and nanobody F2

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-08
Method	X-RAY DIFFRACTION 4.18 Å
Organisms	Homo sapiens Lama glama Severe acute respiratory syndrome coronavirus 2
Macromolecule	Nanobody F2 (protein) Omi-9 heavy chain (protein) Omi-9 light chain (protein) Spike protein S1 (protein)

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7ZF5	Download File View File

SARS-CoV-2 Omicron RBD in complex with Omi-12 and Beta-54 Fabs

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 5.32 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Beta-54 heavy chain (protein) Beta-54 light chain (protein) Omi-12 heavy chain (protein) Omi-12 light chain (protein) Spike protein S1 (protein)

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7ZF6	Download File View File

Omi-12 Fab

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	Omi-12 heavy chain (protein) Omi-12 light chain (protein)
Unique Ligands	CIT, GOL, NAG, SO4

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7ZF7	Download File View File

SARS-CoV-2 Omicron BA.2 RBD in complex with ACE2

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.46 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Processed angiotensin-converting enzyme 2 (protein) Spike protein S1 (protein)
Unique Ligands	NAG, ZN

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7ZF8	Download File View File

SARS-CoV-2 Omicron BA.2 RBD in complex with COVOX-150 Fab

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-150 heavy chain (protein) COVOX-150 light chain (protein) Spike protein S1 (protein)

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7ZF9	Download File View File

SARS-CoV-2 Omicron BA.2 RBD in complex with COVOX-150 Fab (P21)

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-150 heavy chain (protein) COVOX-150 light chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7ZFA	Download File View File

SARS-CoV-2 Omicron RBD in complex with Omi-6 and COVOX-150 Fabs

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-29
Method	X-RAY DIFFRACTION 4.24 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	COVOX-150 heavy chain (protein) COVOX-150 light chain (protein) Omi-6 heavy chain (protein) Omi-6 light chain (protein) Spike protein S1 (protein)

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7ZFB	Download File View File

SARS-CoV-2 Omicron RBD in complex with nanobody C1, Omi-18 and Omi-31 Fabs

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.08 Å
Organisms	Homo sapiens Lama glama Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG

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7ZFC	Download File View File

SARS-CoV-2 Beta RBD in complex with nanobody C1, Omi-18 and Omi-31 Fabs

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.24 Å
Organisms	Homo sapiens Lama glama Severe acute respiratory syndrome coronavirus 2
Macromolecule	Unique protein chains: 6
Unique branched monosaccharides	FUC, NAG

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7ZFD	Download File View File

SARS-CoV-2 Omicron RBD in complex with Omi-25 Fab

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.39 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Omi-25 heavy chain (protein) Omi-25 light chain (protein) Spike protein S1 (protein)

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7ZFE	Download File View File

SARS-CoV-2 Omicron RBD in complex with Omi-32 Fab and nanobody C1

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens Lama glama Severe acute respiratory syndrome coronavirus 2
Macromolecule	Nanobody C1 (protein) Omi-32 heavy chain (protein) Omi-32 light chain (protein) Spike protein S1 (protein)

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7ZFF	Download File View File

Omi-42 Fab

Zhou, D., Huo, J., Ren, J., Stuart, D.I.

(2022) Cell 185: 2116-2131.e18

Released	2022-06-01
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Homo sapiens
Macromolecule	Omi-42 Heavy chain (protein) Omi-42 light chain (protein)
Unique Ligands	GOL