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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Celardo, I."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Homo sapiens (11)
	Escherichia coli K-12 (5)
	Sus scrofa (5)
	Gallus gallus (4)
	Streptococcus thermophilus LMG 18311 (4)
	Mus musculus (3)
	Pseudomonas aeruginosa PAO1 (2)
	Tequatrovirus T4 (2)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Escherichia coli (1)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (13)
	Duplodnaviria (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (6)
	2.0 - 2.5 (7)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)
	3.5 - 4.0 (7)
	4.0 - 4.5 (3)

Release Date

	2015 - 2019 (24)
	2025 - 2029 (9)

Enzyme Classification Name

	Hydrolases (12)
	Transferases (2)

Membrane Protein Annotation

	MemProtMD (24)
	PDBTM (24)
	OPM (6)

Symmetry Type

	Asymmetric (31)
	Cyclic (2)

SCOP Classification

	Membrane and cell surface proteins and peptides (3)
	Alpha and beta proteins (a+b) (5)

AllSelected

1 to 25 of 33 Structures

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Explore in 3D

5D52 \| pdb_00005d52	Download File View File

In meso in situ serial X-ray crystallography structure of insulin at room temperature

Huang, C.-Y., Olieric, V., Warshamanage, R., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Sus scrofa
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)
Unique Ligands	PO4

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5D53 \| pdb_00005d53	Download File View File

In meso in situ serial X-ray crystallography structure of insulin at 100 K

Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sus scrofa
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)
Unique Ligands	PE5, PO4

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5D54 \| pdb_00005d54	Download File View File

In meso X-ray crystallography structure of insulin at 100 K

Huang, C.-Y., Olieric, V., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sus scrofa
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)
Unique Ligands	PE5, PO4

Explore in 3D

5D56 \| pdb_00005d56	Download File View File

In meso in situ serial X-ray crystallography structure of diacylglycerol kinase, DgkA, at 100 K

Huang, C.-Y., Howe, N., Olieric, V., Warshamanage, R., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Diacylglycerol kinase (protein)
Unique Ligands	78M, ACT, FLC, ZN

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5D57 \| pdb_00005d57	Download File View File

In meso X-ray crystallography structure of diacylglycerol kinase, DgkA, at 100 K

Huang, C.-Y., Howe, N., Olieric, V., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12
Macromolecule	Diacylglycerol kinase (protein)
Unique Ligands	78M

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5D58 \| pdb_00005d58	Download File View File

In meso in situ serial X-ray crystallography structure of the PepTSt-Ala-Phe complex at 100 K

Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, ALA, PE5, PHE, PO4

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5D59 \| pdb_00005d59	Download File View File

In meso X-ray crystallography structure of the PepTSt-Ala-Phe complex at 100 K

Huang, C.-Y., Olieric, V., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, ALA, PE5, PHE, PO4

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5D5A \| pdb_00005d5a	Download File View File

In meso in situ serial X-ray crystallography structure of the Beta2-adrenergic receptor at 100 K

Huang, C.-Y., Olieric, V., Warshamanage, R., Liu, X., Kobilka, B., Kay Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.4826 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor (protein)
Unique Ligands	12P, ACM, BU1, CAU, CLR, PLM, SO4
Unique branched monosaccharides	BGC, GLC

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5D5B \| pdb_00005d5b	Download File View File

In meso X-ray crystallography structure of the Beta2-adrenergic receptor at 100 K

Huang, C.-Y., Olieric, V., Liu, X., Kobilka, B., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Homo sapiens Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor,Endolysin,Beta-2 adrenergic receptor (protein)
Unique Ligands	ACM, BU1, CAU, CLR, PLM, SO4
Unique branched monosaccharides	BGC, GLC

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5D5C \| pdb_00005d5c	Download File View File

In meso in situ serial X-ray crystallography structure of lysozyme at 100 K

Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACY, BR, NA, PE5

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5D5D \| pdb_00005d5d	Download File View File

In meso in situ serial X-ray crystallography structure of AlgE at 100 K

Ma, P., Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Alginate production protein AlgE (protein)
Unique Ligands	78M, CA, LDA, MES, NA, PE5

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5D5E \| pdb_00005d5e	Download File View File

In meso in situ serial X-ray crystallography structure of insulin by sulfur-SAD at 100 K

Huang, C.-Y., Olieric, V., Warshamanage, R., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.407 Å
Organisms	Sus scrofa
Macromolecule	Insulin A chain (protein) Insulin B chain (protein)
Unique Ligands	PE5, PO4

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5D5F \| pdb_00005d5f	Download File View File

In meso in situ serial X-ray crystallography structure of lysozyme by bromine-SAD at 100 K

Huang, C.-Y., Olieric, V., Diederichs, K., Wang, M., Caffrey, M.

(2016) Acta Crystallogr D Struct Biol 72: 93-112

Released	2016-01-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	ACY, BR, NA, PE5

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5LIN \| pdb_00005lin	Download File View File

Lysozyme, collected at rotation 1 degree per second

Casanas, A., Finke, A., Wang, M.

(2016) Acta Crystallogr D Struct Biol 72: 1036-1048

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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5LIO \| pdb_00005lio	Download File View File

Lysozyme, collected at rotation 360 degree per second

Casanas, A., Finke, A., Wang, M.

(2016) Acta Crystallogr D Struct Biol 72: 1036-1048

Released	2016-08-03
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL

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5LIS \| pdb_00005lis	Download File View File

Insulin solved by Native SAD from a dataset collected in one second

Casanas, A., Finke, A., Wang, M.

(2016) Acta Crystallogr D Struct Biol 72: 1036-1048

Released	2016-08-03
Method	X-RAY DIFFRACTION 2.293 Å
Organisms	Sus scrofa
Macromolecule	Insulin (protein)

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5OON \| pdb_00005oon	Download File View File

Structure of Undecaprenyl-Pyrophosphate Phosphatase, BacA

Huang, C.-Y., Olieric, V., Warshamanage, R., Wang, M., Howe, N., Ghachi, M.E.I., Weichert, D., Kerff, F., Stansfeld, P., Touze, T., Caffrey, M.

(2018) Nat Commun 9: 1078-1078

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	HG, OLC, TRS

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6FMR \| pdb_00006fmr	Download File View File

IMISX-EP of Se-PepTSt

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PO4

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6FMS \| pdb_00006fms	Download File View File

IMISX-EP of Se-LspA

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-08-29
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pseudomonas aeruginosa PAO1 synthetic construct
Macromolecule	Globomycin (protein) Lipoprotein signal peptidase (protein)
Unique Ligands	OLC

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6FMT \| pdb_00006fmt	Download File View File

IMISX-EP of Hg-BacA Soaking SAD

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	HG, OLC, TRS

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6FMV \| pdb_00006fmv	Download File View File

IMISX-EP of Hg-BacA soaking SIRAS

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	FLC, OLC, TRS

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6FMW \| pdb_00006fmw	Download File View File

IMISX-EP of Hg-BacA cocrystallization

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12
Macromolecule	Undecaprenyl-diphosphatase (protein)
Unique Ligands	HG, OLC, TRS

Explore in 3D

6FMX \| pdb_00006fmx	Download File View File

IMISX-EP of W-PgpB

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Phosphatidylglycerophosphatase B (protein)
Unique Ligands	OLC, WO4

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6FMY \| pdb_00006fmy	Download File View File

IMISX-EP of S-PepTSt

Huang, C.-Y., Olieric, V., Howe, N., Warshamanage, R., Weinert, T., Panepucci, E., Vogeley, L., Basu, S., Diederichs, K., Caffrey, M., Wang, M.

(2018) Commun Biol 1: 124-124

Released	2018-09-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Streptococcus thermophilus LMG 18311
Macromolecule	Di-or tripeptide:H+ symporter (protein)
Unique Ligands	78M, PE5, PO4

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8KDD \| pdb_00008kdd	Download File View File

Structure of LAT1-CD98hc-Fab170 in complex with JPH203, consensus map

Lee, Y.

(2025) Nat Commun 16: 1635-1635

Released	2025-02-12
Method	ELECTRON MICROSCOPY 3.83 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	4F2 cell-surface antigen heavy chain (protein) Fab170 heavy chain (protein) Fab170 light chain (protein) Large neutral amino acids transporter small subunit 1 (protein)
Unique Ligands	NAG, VRW

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5D52 | pdb_00005d52

5D53 | pdb_00005d53

5D54 | pdb_00005d54

5D56 | pdb_00005d56

5D57 | pdb_00005d57

5D58 | pdb_00005d58

5D59 | pdb_00005d59

5D5A | pdb_00005d5a

5D5B | pdb_00005d5b

5D5C | pdb_00005d5c

5D5D | pdb_00005d5d

5D5E | pdb_00005d5e

5D5F | pdb_00005d5f

5LIN | pdb_00005lin

5LIO | pdb_00005lio

5LIS | pdb_00005lis

5OON | pdb_00005oon

6FMR | pdb_00006fmr

6FMS | pdb_00006fms

6FMT | pdb_00006fmt

6FMV | pdb_00006fmv

6FMW | pdb_00006fmw

6FMX | pdb_00006fmx

6FMY | pdb_00006fmy

8KDD | pdb_00008kdd