RCSB PDB: Search

2LUJ	Download File View File

Solution structure of a parallel-stranded oligoisoguanine DNA pentaplex formed by d(T(iG)4T) in the presence of Cs ions

Kang, M., Heuberger, B., Chaput, J.C., Switzer, C., Feigon, J.

(2012) Angew Chem Int Ed Engl 51: 7952-7955

Released	2012-07-25
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(TP(IGU)P(IGU)P(IGU)P(IGU)PT)-3') (nucleic acid)

2P05	Download File View File

Structural Insights into the Evolution of a Non-Biological Protein

Smith, M., Rosenow, M., Wang, M., Allen, J.P., Szostak, J.W., Chaput, J.C.

(2007) PLoS One 2: e467-e467

Released	2007-06-05
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	unidentified
Macromolecule	a non-biological ATP binding protein 1819 (protein)
Unique Ligands	1PE, ADP, CL, ZN

2P09	Download File View File

Structural Insights into the Evolution of a Non-Biological Protein

Smith, M., Rosenow, M., Wang, M., Allen, J.P., Szostak, J.W., Chaput, J.C.

(2007) PLoS One 2: e467-e467

Released	2007-06-05
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	unidentified
Macromolecule	a non-biological ATP binding protein with two mutations N32D and D65V (protein)
Unique Ligands	1PE, ATP, CL, ZN

Mansy, S.S., Szostak, J.W., Chaput, J.C.

2P0X	Download File View File

solution structure of a non-biological ATP-binding protein

(2007) J Mol Biol 371: 501-513

Released	2007-08-07
Method	SOLUTION NMR
Organisms	synthetic gene
Macromolecule	abiotic ATP-binding, folding optimized protein (protein)
Unique Ligands	ATP, ZN

3DGL	Download File View File

1.8 A Crystal Structure of a Non-biological Protein with Bound ATP in a Novel Bent Conformation

(2009) ACS Chem Biol 4: 649-658

Released	2009-06-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	unidentified
Macromolecule	ATP Binding Protein-DX (protein)
Unique Ligands	ATP, PEG, ZN

3DGM	Download File View File

2.4 A Structure of a Non-biological ATP binding protein with ADP bound

To be published

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	unidentified
Macromolecule	ATP Binding Protein-DX (protein)
Unique Ligands	ADP, PEG, ZN

3DGN	Download File View File

A non-biological ATP binding protein crystallized in the presence of 100 mM ADP

(2009) ACS Chem Biol 4: 649-658

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	unidentified
Macromolecule	ATP Binding Protein-DX (protein)
Unique Ligands	ADP, PEG, ZN

3DGO	Download File View File

A non-biological ATP binding protein with a Tyr-Phe mutation in the ligand binding domain

(2009) ACS Chem Biol 4: 649-658

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	unidentified
Macromolecule	ATP Binding Protein-DX (protein)
Unique Ligands	ATP, CL, PEG, ZN

3LT8	Download File View File

A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding, crystallized in the presence of 100 mM ATP.

Simmons, C.R., Magee, C.L., Allen, J.P., Chaput, J.C.

(2010) Biochemistry 49: 8689-8699

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	synthetic construct
Macromolecule	ATP BINDING PROTEIN-D65V (protein)
Unique Ligands	ADP, CL, PEG, ZN

3LT9	Download File View File

A non-biological ATP binding protein with a single point mutation (D65V), that contributes to optimized folding and ligand binding

Simmons, C.R., Magee, C.L., Allen, J.P., Chaput, J.C.

(2010) Biochemistry 49: 8689-8699

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	synthetic construct
Macromolecule	ATP BINDING PROTEIN-D65V (protein)
Unique Ligands	ADP, CL, PEG, ZN

3LTA	Download File View File

Crystal structure of a non-biological ATP binding protein with a TYR-PHE mutation within the ligand binding domain

Simmons, C.R., Magee, C.L., Allen, J.P., Chaput, J.C.

(2010) Biochemistry 49: 8689-8699

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	synthetic construct
Macromolecule	ATP BINDING PROTEIN-DX (protein)
Unique Ligands	ATP, CL, PEG, ZN

3LTB	Download File View File

X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.6 A after 3 weeks of incubation

Simmons, C.R., Magee, C.L., Allen, J.P., Chaput, J.C.

(2010) Biochemistry 49: 8689-8699

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	synthetic construct
Macromolecule	ATP BINDING PROTEIN-DX (protein)
Unique Ligands	ADP, CL, PEG, ZN

3LTC	Download File View File

X-ray structure of a non-biological ATP binding protein determined in the presence of 10 mM ATP at 2.0 A by multi-wavelength anomalous dispersion

Simmons, C.R., Magee, C.L., Allen, J.P., Chaput, J.C.

(2010) Biochemistry 49: 8689-8699

Released	2010-09-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	synthetic construct
Macromolecule	ATP BINDING PROTEIN-DX (protein)
Unique Ligands	ATP, CL, PEG, ZN

3LTD	Download File View File

X-ray structure of a non-biological ATP binding protein determined at 2.8 A by multi-wavelength anomalous dispersion

Simmons, C.R., Magee, C.L., Allen, J.P., Chaput, J.C.

(2010) Biochemistry 49: 8689-8699

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	synthetic construct
Macromolecule	ATP BINDING PROTEIN-DX (protein)
Unique Ligands	ADP, CL, PEG, ZN

5VU5	Download File View File

TNA polymerase, apo

(2017) Nat Commun 8: 1810-1810

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Thermococcus kodakarensis
Macromolecule	DNA polymerase (protein)

5VU6	Download File View File

TNA polymerase binary complex with primer/template duplex

(2017) Nat Commun 8: 1810-1810

Released	2017-12-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermococcus kodakarensis synthetic construct
Macromolecule	DNA polymerase (protein) DNA template (nucleic acid) DNA/TNA hybrid primer (nucleic acid)

5VU7	Download File View File

TNA polymerase, open ternary complex

(2017) Nat Commun 8: 1810-1810

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Thermococcus kodakarensis synthetic construct
Macromolecule	DNA polymerase (protein) DNA template (nucleic acid) DNA/TNA hybrid primer (nucleic acid)
Unique Ligands	FA2, MG, SO4

5VU8	Download File View File

TNA polymerase, closed ternary complex

(2017) Nat Commun 8: 1810-1810

Released	2017-12-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Thermococcus kodakarensis synthetic construct
Macromolecule	DNA polymerase (protein) DNA template (nucleic acid) DNA/TNA hybrid primer (nucleic acid)
Unique Ligands	9O7, MG

5VU9	Download File View File

TNA polymerase, translocated product

(2017) Nat Commun 8: 1810-1810

Released	2017-12-06
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermococcus kodakarensis synthetic construct
Macromolecule	DNA polymerase (protein) DNA template (nucleic acid) DNA/TNA hybrid primer (nucleic acid)

6DSU	Download File View File

Bst DNA polymerase I pre-insertion complex structure

(2018) Elife 7:

Released	2018-10-31
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase I (protein) DNA (5'-D(GPCPGPAPTPCPAPCPGPT)-3') (nucleic acid) DNA (5'-D(PAPCPGPTPGPAPTPCPGPCP*A)-3') (nucleic acid)
Unique Ligands	DZ4, MG, SO4

6DSV	Download File View File

Bst DNA polymerase I post-chemistry (n+2) structure

(2018) Elife 7:

Released	2018-10-31
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase I (protein) DNA (5'-D(GPCPGPAPTPCPAPCPGPTPA)-3') (nucleic acid) DNA (5'-D(PTPAPCPGPTPGPAPTPCPGPCP*A)-3') (nucleic acid)
Unique Ligands	MG, SO4

6DSW	Download File View File

Bst DNA polymerase I pre-chemistry (n) structure

(2018) Elife 7:

Released	2018-10-31
Method	X-RAY DIFFRACTION 1.589 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase I (protein) DNA (5'-D(GPCPGPAPTPCPAPCPG)-3') (nucleic acid) DNA (5'-D(PAPCPGPTPAPCPGPTPGPAPTPCPGPCPA)-3') (nucleic acid)
Unique Ligands	MG, MPD, SO4

6DSX	Download File View File

Bst DNA polymerase I post-chemistry (n+1 with dATP soak) structure

(2018) Elife 7:

Released	2018-10-31
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase I (protein) DNA (5'-D(GPCPGPAPTPCPAPCPGPTPA)-3') (nucleic acid) DNA (5'-D(GPTPAPCPGPTPGPAPTPCPGPCPA)-3') (nucleic acid)
Unique Ligands	MG, SO4

6DSY	Download File View File

Bst DNA polymerase I post-chemistry (n+1) structure

(2018) Elife 7:

Released	2018-10-31
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Geobacillus stearothermophilus synthetic construct
Macromolecule	DNA polymerase I (protein) DNA (5'-D(GPCPGPAPTPCPAPCPGPT)-3') (nucleic acid) DNA (5'-D(PGPTPAPCPGPTPGPAPTPCPGPCP*A)-3') (nucleic acid)
Unique Ligands	MG, SO4