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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Correia, H.D."

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Search Summary

This query matches 28 Structures.

Refinements

Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Agrobacterium tumefaciens (14)
	Agrobacterium fabrum str. C58 (8)
	Allorhizobium ampelinum S4 (6)

Taxonomy

Bacteria (28)

Experimental Method

X-RAY DIFFRACTION (28)

Polymer Entity Type

	Protein (28)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (11)
	2.0 - 2.5 (6)
	2.5 - 3.0 (2)

Release Date

2020 - 2024 (28)

Symmetry Type

	Asymmetric (23)
	Cyclic (3)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (1)

AllSelected

1 to 25 of 28 Structures

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6TFQ \| pdb_00006tfq	Download File View File

Structure in P3212 form of the PBP/SBP MoaA in complex with mannopinic acid from A.tumefacien R10

Morera, S., Vigouroux, A.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	CL, GLC, N72, SO4

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6TFS \| pdb_00006tfs	Download File View File

Structure in P3212 form of the PBP/SBP MoaA in complex with glucopinic acid from A.tumefacien R10

Morera, S., Vigouroux, A.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	CL, N7T, SO4

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6TFX \| pdb_00006tfx	Download File View File

Structure in P21 form of the PBP/SBP MoaA in complex with mannopinic acid from A.tumefacien R10

Morera, S., Vigouroux, A.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	ABC transporter substrate-binding protein (protein)
Unique Ligands	EDO, MG, N72, PEG

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6TG2 \| pdb_00006tg2	Download File View File

Structure of the PBP/SBP MotA in complex with mannopinic acid from A.tumefacien R10

Morera, S., Marty, L.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	MotA (protein)
Unique Ligands	CA, EDO, N72, PEG

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6TG3 \| pdb_00006tg3	Download File View File

Crystal Structure of the PBP/SBP MotA in complex with glucopinic acid from A. tumefaciens B6/R10

Morera, S., Vigouroux, S.

(2020) Biochem J 477: 615-628

Released	2020-01-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	MotA (protein)
Unique Ligands	EDO, N7T

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6Z74 \| pdb_00006z74	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum

Morera, S., Vigouroux, V.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein)
Unique Ligands	CIT, EDO, GOL, NA, PEG, SO4, ZN

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6ZA0 \| pdb_00006za0	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) in complex with a fortuitous citrate from agrobacterium fabrum (P21212 space group)

Morera, S., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein)
Unique Ligands	CIT, EDO, PEG, ZN

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6ZA3 \| pdb_00006za3	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (C2221 space group)

Morera, S., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein) DNA (5'-D(APTPGPTPAPTPAPCPAPT)-3') (nucleic acid)
Unique Ligands	ACT, CL, EDO, PG4, ZN

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6ZA7 \| pdb_00006za7	Download File View File

Structure of the apo transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum

Morera, S., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein)
Unique Ligands	GOL, PEG, SO4, ZN

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6ZAB \| pdb_00006zab	Download File View File

Structure of the transcriptional repressor Atu1419 (VanR) from agrobacterium fabrum in complex a palindromic DNA (P6422 space group)

Morera, S., Naretto, A., Vigouroux, A., Legrand, P.

(2021) Nucleic Acids Res 49: 529-546

Released	2020-12-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Agrobacterium fabrum str. C58
Macromolecule	Transcriptional regulator, GntR family (protein) DNA (5'-D(APTPGPTPAPTPAPCPAPT)-3') (nucleic acid)
Unique Ligands	CIT, EDO, PEG, ZN

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8C6R \| pdb_00008c6r	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.884 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, PEG, PGE

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8C6U \| pdb_00008c6u	Download File View File

PBP AccA-G145YG440Q mutant from A. tumefaciens Bo542 in apoform 4

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.843 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ACT, EDO, PEG

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8C6W \| pdb_00008c6w	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 1

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)

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8C6Y \| pdb_00008c6y	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 2

Morera, S., Vigouroux, A., legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO

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8C75 \| pdb_00008c75	Download File View File

PBP AccA from A. tumefaciens Bo542 in apoform 3

Morera, S., Vigouroux, A., Legrand, P.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.673 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, NA, PEG, PGE

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8CAW \| pdb_00008caw	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with agrocin84

Morera, S., Vigouroux, A., El Sahili, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.256 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	C84, EDO, UKU

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8CAY \| pdb_00008cay	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with Agrocinopine D-like

Morera, S., Vigouroux, A., Siragu, S.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.626 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	NA, PEG, Y45, Y4H

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8CB9 \| pdb_00008cb9	Download File View File

PBP AccA from A. tumefaciens Bo542 in complex with D-Glucose-2-phosphate

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX

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8CDO \| pdb_00008cdo	Download File View File

PBP AccA-F144YG440Q from A. tumefaciens Bo542 in complex with agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX, BNX, EDO, PEG, PG4, PGE
Unique branched monosaccharides	FRU, GLC

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8CH1 \| pdb_00008ch1	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine A

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.496 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	EDO, LAO, PEG, VDF
Unique branched monosaccharides	FRU, GLC

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8CH2 \| pdb_00008ch2	Download File View File

PBP AccA from A. vitis S4 in complex with L-arabinose-2-phosphate (A2P)

Morera, S., Deicsics, G., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.404 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	AccA (protein)
Unique Ligands	EDO, LAO, VDF

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8CH3 \| pdb_00008ch3	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine C-like

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.398 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	ALX
Unique branched monosaccharides	FRU, GLC

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8CHC \| pdb_00008chc	Download File View File

PBP AccA from A. vitis S4 in complex with Agrocinopine D-like

Morera, S., Vigouroux, A., Deicsics, G.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.679 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	Agrocinopine utilization periplasmic binding protein AccA (protein)
Unique Ligands	Y45

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8CI6 \| pdb_00008ci6	Download File View File

PBP AccA from A. vitis S4 in complex with D-glucose-2-phosphate (G2P)

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.199 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	ABC transporter substrate binding protein (Agrocinopine) (protein)
Unique Ligands	ALX, BNX

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8CJU \| pdb_00008cju	Download File View File

PBP AccA from A. vitis S4 in complex with agrocin84

Morera, S., Vigouroux, A.

(2024) Biochem J 481: 93-117

Released	2024-01-24
Method	X-RAY DIFFRACTION 1.349 Å
Organisms	Allorhizobium ampelinum S4
Macromolecule	ABC transporter substrate binding protein (Agrocinopine) (protein)
Unique Ligands	UKU

1 to 25 of 28 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

6TFQ | pdb_00006tfq

6TFS | pdb_00006tfs

6TFX | pdb_00006tfx

6TG2 | pdb_00006tg2

6TG3 | pdb_00006tg3

6Z74 | pdb_00006z74

6ZA0 | pdb_00006za0

6ZA3 | pdb_00006za3

6ZA7 | pdb_00006za7

6ZAB | pdb_00006zab

8C6R | pdb_00008c6r

8C6U | pdb_00008c6u

8C6W | pdb_00008c6w

8C6Y | pdb_00008c6y

8C75 | pdb_00008c75

8CAW | pdb_00008caw

8CAY | pdb_00008cay

8CB9 | pdb_00008cb9

8CDO | pdb_00008cdo

8CH1 | pdb_00008ch1

8CH2 | pdb_00008ch2

8CH3 | pdb_00008ch3

8CHC | pdb_00008chc

8CI6 | pdb_00008ci6

8CJU | pdb_00008cju