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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Davis, I."

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Search Summary

This query matches 71 Structures.

Refinements

Structure Determination Methodology

experimental (71)

Scientific Name of Source Organism

	Pseudomonas fluorescens (22)
	Homo sapiens (14)
	Cupriavidus metallidurans CH34 (12)
	Mycobacterium tuberculosis (8)
	Streptomyces lavendulae (4)
	Streptomyces sclerotialus (4)
	Fusarium graminearum (3)
	Mycobacterium tuberculosis H37Rv (2)
	Streptococcus sp. (2)

Taxonomy

	Bacteria (54)
	Eukaryota (17)

Experimental Method

X-RAY DIFFRACTION (71)

Polymer Entity Type

Protein (71)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (31)
	2.0 - 2.5 (29)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (14)
	2015 - 2019 (25)
	2020 - 2024 (32)

Enzyme Classification Name

	Oxidoreductases (45)
	Lyases (8)

Symmetry Type

	Cyclic (31)
	Asymmetric (29)
	Dihedral (14)

SCOP Classification

	Alpha and beta proteins (a/b) (22)
	All beta proteins (28)
	Artifacts (5)
	All alpha proteins (3)

AllSelected

1 to 25 of 71 Structures

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4HSJ \| pdb_00004hsj	Download File View File

1.88 angstrom x-ray crystal structure of piconlinic-bound 3-hydroxyanthranilate-3,4-dioxygenase

Liu, F., Chen, L., Davis, C.I., Liu, A.

(2015) J Biological Chem 290: 15621-15634

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.883 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	3-hydroxyanthranilate 3,4-dioxygenase (protein)
Unique Ligands	6PC, FE2

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4HVO \| pdb_00004hvo	Download File View File

1.75 angstrom x-ray crystal structure of cufe reconstituted 3-hydroxyanthranilate-3,4-dioxygenase from cupriavidus metallidurans

Liu, F., Chen, L., Liu, A.

(2015) J Biological Chem 290: 15621-15634

Released	2013-11-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	3-hydroxyanthranilate 3,4-dioxygenase (protein)
Unique Ligands	CU, FE2

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4HVQ \| pdb_00004hvq	Download File View File

X-ray crystal structure of FECU reconstituted 3-hydroxyanthranilate-3,4-dioxygenase from cupriavidus metallidurans

Liu, F., Chen, L., Liu, A.

(2015) J Biological Chem 290: 15621-15634

Released	2013-11-27
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	3-hydroxyanthranilate 3,4-dioxygenase (protein)
Unique Ligands	FE2, TRS

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4I1W \| pdb_00004i1w	Download File View File

2.00 Angstroms X-ray crystal structure of NAD- bound 2-aminomuconate 6-semialdehyde dehydrogenase from Pseudomonas fluorescens

Huo, L., Davis, I., Chen, L., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.992 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	GOL, NAD

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4I25 \| pdb_00004i25	Download File View File

2.00 Angstroms X-ray crystal structure of NAD- and substrate-bound 2-aminomuconate 6-semialdehyde dehydrogenase from Pseudomonas fluorescens

Huo, L., Davis, I., Chen, L., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-05-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	6OD, NA, NAD

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4I26 \| pdb_00004i26	Download File View File

2.20 Angstroms X-ray crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase from Pseudomonas fluorescens

Davis, I., Huo, L., Chen, L., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.204 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	EDO, NA

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4I2R \| pdb_00004i2r	Download File View File

2.15 Angstroms X-ray crystal structure of NAD- and alternative substrate-bound 2-aminomuconate 6-semialdehyde dehydrogenase from Pseudomonas fluorescens

Huo, L., Davis, I., Chen, L., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	6OH, NA, NAD

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4IFK \| pdb_00004ifk	Download File View File

Arginines 51 and 239* from a Neighboring Subunit are Essential for Catalysis in a Zinc-dependent Decarboxylase

Huo, L., Davis, I., Chen, L., Liu, A.

(2013) J Biological Chem 288: 30862-30871

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.012 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	MG, ZN

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4IFO \| pdb_00004ifo	Download File View File

2.50 Angstroms X-ray crystal structure of R51A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase from Pseudomonas fluorescens

Huo, L., Davis, I., Chen, L., Liu, A.

(2013) J Biological Chem 288: 30862-30871

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	ZN

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4IFR \| pdb_00004ifr	Download File View File

2.40 Angstroms X-ray crystal structure of R239A 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase from Pseudomonas fluorescens

Huo, L., Davis, I., Chen, L., Liu, A.

(2013) J Biological Chem 288: 30862-30871

Released	2013-09-18
Method	X-RAY DIFFRACTION 2.391 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	ZN

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4IG2 \| pdb_00004ig2	Download File View File

1.80 Angstroms X-ray crystal structure of R51A and R239A heterodimer 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase from Pseudomonas fluorescens

Huo, L., Davis, I., Chen, L., Liu, A.

(2013) J Biological Chem 288: 30862-30871

Released	2013-09-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-amino-3-carboxymuconate 6-semialdehyde decarboxylase (protein)
Unique Ligands	ZN

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4L2N \| pdb_00004l2n	Download File View File

Understanding Extradiol Dioxygenase Mechanism in NAD+ Biosynthesis by Viewing Catalytic Intermediates - ligand-free structure

Liu, F., Liu, A.

(2015) J Biological Chem 290: 15621-15634

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Cupriavidus metallidurans CH34
Macromolecule	3-hydroxyanthranilate 3,4-dioxygenase (protein)
Unique Ligands	CL, FE2, TRS

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4NPI \| pdb_00004npi	Download File View File

1.94 Angstroms X-ray crystal structure of NAD- and intermediate- bound alpha-aminomuconate-epsilon-semialdehyde dehydrogenase from Pseudomonas fluorescens

Huo, L., Davis, I., Liu, F., Iwaki, H., Hasegawa, Y., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-12-24
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	2VS, NA, NAD

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4OE2 \| pdb_00004oe2	Download File View File

2.00 Angstroms X-ray crystal structure of E268A 2-aminomuconate 6-semialdehyde dehydrogenase from Pseudomonas fluorescens

Huo, L., Davis, I., Liu, F., Esaki, S., Iwaki, H., Hasegawa, Y., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-12-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	GOL, NA, NAD

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4OU2 \| pdb_00004ou2	Download File View File

A 2.15 Angstroms X-ray crystal structure of E268A 2-aminomuconate 6-semialdehyde dehydrogenase catalytic intermediate from Pseudomonas fluorescens

Huo, L., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	6OA, NA, NAD

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4OUB \| pdb_00004oub	Download File View File

A 2.20 angstroms X-ray crystal structure of E268A 2-aminomucaonate 6-semialdehyde dehydrogenase catalytic intermediate from Pseudomonas fluorescens

Huo, L., Liu, A.

(2015) Nat Commun 6: 5935-5935

Released	2014-12-24
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	2VS, NA, NAD

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5KJ5 \| pdb_00005kj5	Download File View File

Crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase N169D in complex with NAD+

Yang, Y., Davis, I., Ha, U., Wang, Y., Shin, I., Liu, A.

(2016) J Biological Chem 291: 26252-26261

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.113 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	NAD

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5KLK \| pdb_00005klk	Download File View File

Crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase N169D in complex with NAD+ and 2-hydroxymuconate-6-semialdehyde

Yang, Y., Davis, I., Ha, U., Wang, Y., Shin, I., Liu, A.

(2016) J Biological Chem 291: 26252-26261

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.006 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	6OH, NA, NAD

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5KLL \| pdb_00005kll	Download File View File

Crystal structure of 2-hydroxymuconate-6-semialdehyde derived tautomeric intermediate in 2-aminomuconate 6-semialdehyde dehydrogenase N169D

Yang, Y., Davis, I., Ha, U., Wang, Y., Shin, I., Liu, A.

(2016) J Biological Chem 291: 26252-26261

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	6UN, NA

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5KLM \| pdb_00005klm	Download File View File

Crystal structure of 2-hydroxymuconate-6-semialdehyde derived intermediate in NAD(+)-bound 2-aminomuconate 6-semialdehyde dehydrogenase N169D

Yang, Y., Davis, I., Ha, U., Wang, Y., Shin, I., Liu, A.

(2016) J Biological Chem 291: 26252-26261

Released	2016-11-09
Method	X-RAY DIFFRACTION 2.102 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	NA, NAD

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5KLN \| pdb_00005kln	Download File View File

Crystal structure of 2-aminomuconate 6-semialdehyde dehydrogenase N169A in complex with NAD+

Yang, Y., Davis, I., Ha, U., Wang, Y., Shin, I., Liu, A.

(2016) J Biological Chem 291: 26252-26261

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.992 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	NA, NAD

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5KLO \| pdb_00005klo	Download File View File

Crystal structure of thioacyl intermediate in 2-aminomuconate 6-semialdehyde dehydrogenase N169A

Yang, Y., Davis, I., Ha, U., Wang, Y., Shin, I., Liu, A.

(2016) J Biological Chem 291: 26252-26261

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Pseudomonas fluorescens
Macromolecule	2-aminomuconate 6-semialdehyde dehydrogenase (protein)
Unique Ligands	2VS, NA, NAD

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5WP2 \| pdb_00005wp2	Download File View File

1.44 Angstrom crystal structure of CYP121 from Mycobacterium tuberculosis in complex with substrate and CN

Fielding, A., Dornevil, K., Liu, A.

(2017) J Am Chem Soc 139: 17484-17499

Released	2018-05-30
Method	X-RAY DIFFRACTION 1.439 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Mycocyclosin synthase (protein)
Unique Ligands	CYN, HEM, SO4, YTT

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6BGF \| pdb_00006bgf	Download File View File

Crystal structure of cysteine-bound ferrous form of the crosslinked human cysteine dioxygenase

Liu, A., Li, J., Shin, I.

(2018) Nat Chem Biol 14: 853-860

Released	2017-12-13
Method	X-RAY DIFFRACTION 2.251 Å
Organisms	Homo sapiens
Macromolecule	Cysteine dioxygenase type 1 (protein)
Unique Ligands	CYS, FE2, GOL, SO4