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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Dmitrienko, G.I."

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This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Stenotrophomonas maltophilia (8)
	Pseudomonas aeruginosa (3)
	Rattus norvegicus (1)
	Saccharomyces cerevisiae (1)
	Serratia marcescens (1)

Taxonomy

	Bacteria (12)
	Eukaryota (2)

Experimental Method

X-RAY DIFFRACTION (14)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (1)
	2015 - 2019 (6)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (12)
	Lyases (1)
	Oxidoreductases (1)
	Transferases (1)

Symmetry Type

	Asymmetric (5)
	Dihedral (8)
	Cyclic (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Multi-domain proteins (alpha and beta) (1)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

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1 to 14 of 14 Structures

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2Q99 \| pdb_00002q99	Download File View File

Crystal Structure of Saccharopine Dehydrogenase from Saccharomyces cerevisiae

Berghuis, A.M., Burk, D.L.

(2007) J Mol Biology 373: 745-754

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Saccharopine dehydrogenase [NAD+, L-lysine-forming (protein)

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3LCE \| pdb_00003lce	Download File View File

Crystal Structure of Oxa-10 Beta-Lactamase Covalently Bound to Cyclobutanone Beta-Lactam Mimic

Gretes, M., Strynadka, N.C.J.

(2010) J Am Chem Soc 132: 2558-2560

Released	2010-03-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase OXA-10 (protein)
Unique Ligands	GOL, LCE, PO4

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5HH4 \| pdb_00005hh4	Download File View File

Crystal structure of metallo-beta-lactamase IMP-1 in complex with a phosphonate-based inhibitor

Hinchliffe, P., Spencer, J.

(2018) Biochemistry 57: 1880-1892

Released	2017-01-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Serratia marcescens
Macromolecule	Beta-lactamase IMP-1 (protein)
Unique Ligands	60M, CL, EDO, ZN

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5HH5 \| pdb_00005hh5	Download File View File

Crystal structure of B3 metallo-beta-lactamase L1 complexed with a phosphonate-based inhibitor

Hinchliffe, P., Spencer, J.

(2018) Biochemistry 57: 1880-1892

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	60M, GOL, SO4, ZN

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5HH6 \| pdb_00005hh6	Download File View File

Crystal structure of B3 metallo-beta-lactamase L1 in complex with a phosphonate-based inhibitor

Hinchliffe, P., Spencer, J.

(2018) Biochemistry 57: 1880-1892

Released	2017-01-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	60N, SO4, ZN

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5NDB \| pdb_00005ndb	Download File View File

Crystal structure of metallo-beta-lactamase SPM-1 complexed with cyclobutanone inhibitor

Hinchliffe, P., Spencer, J.

(2018) Chemistry 24: 5734-5737

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase IMP-1 (protein)
Unique Ligands	8TW, CL, DMS, GOL, SO4, TRS, ZN

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5NDE \| pdb_00005nde	Download File View File

Crystal structure of metallo-beta-lactamase SPM-1 in space group P4222

Hinchliffe, P., Spencer, J.

(2018) Chemistry 24: 5734-5737

Released	2018-01-17
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Beta-lactamase IMP-1 (protein)
Unique Ligands	CL, GOL, SO4, ZN

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6P5O \| pdb_00006p5o	Download File View File

The structure of rat cytosolic PEPCK in complex with 3-(carboxymethylthiol)-picolinic acid

Mcleod, M.J., Holyoak, T.

(2019) Biochemistry 58: 3918-3926

Released	2019-09-18
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Rattus norvegicus
Macromolecule	Phosphoenolpyruvate carboxykinase, cytosolic [GTP] (protein)
Unique Ligands	MN, NA, O2Y

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7ZO2 \| pdb_00007zo2	Download File View File

L1 metallo-beta-lactamase complex with hydrolysed doripenem

Hinchliffe, P., Spencer, J.

(2023) J Biological Chem 299: 104606-104606

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	CL, DQM, SO4, ZN

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7ZO3 \| pdb_00007zo3	Download File View File

L1 metallo-beta-lactamase in complex with hydrolysed tebipenem

Hinchliffe, P., Spencer, J.

(2023) J Biological Chem 299: 104606-104606

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	JNQ, SO4, ZN

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7ZO4 \| pdb_00007zo4	Download File View File

L1 metallo-beta-lactamase in complex with hydrolysed panipenem

Hinchliffe, P., Spencer, J.

(2023) J Biological Chem 299: 104606-104606

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	JOI, NA, SO4, ZN

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7ZO5 \| pdb_00007zo5	Download File View File

L1 metallo-beta-lactamase in complex with a mecillinam degradation product

Hinchliffe, P., Spencer, J.

(2023) J Biological Chem 299: 104606-104606

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	JO9, SO4, ZN

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7ZO6 \| pdb_00007zo6	Download File View File

L1 metallo-beta-lactamase in complex with hydrolysed cefoxitin

Hinchliffe, P., Spencer, J.

(2023) J Biological Chem 299: 104606-104606

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	JNX, SO4, ZN

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7ZO7 \| pdb_00007zo7	Download File View File

L1 metallo-beta-lactamase in complex with hydrolysed cefmetazole

Hinchliffe, P., Spencer, J.

(2023) J Biological Chem 299: 104606-104606

Released	2023-03-08
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	Metallo-beta-lactamase L1 (protein)
Unique Ligands	JOU, SO4, ZN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2Q99 | pdb_00002q99

Crystal Structure of Saccharopine Dehydrogenase from Saccharomyces cerevisiae

3LCE | pdb_00003lce

Crystal Structure of Oxa-10 Beta-Lactamase Covalently Bound to Cyclobutanone Beta-Lactam Mimic

5HH4 | pdb_00005hh4

Crystal structure of metallo-beta-lactamase IMP-1 in complex with a phosphonate-based inhibitor

5HH5 | pdb_00005hh5

Crystal structure of B3 metallo-beta-lactamase L1 complexed with a phosphonate-based inhibitor

5HH6 | pdb_00005hh6

Crystal structure of B3 metallo-beta-lactamase L1 in complex with a phosphonate-based inhibitor

5NDB | pdb_00005ndb

Crystal structure of metallo-beta-lactamase SPM-1 complexed with cyclobutanone inhibitor

5NDE | pdb_00005nde

Crystal structure of metallo-beta-lactamase SPM-1 in space group P4222

6P5O | pdb_00006p5o

The structure of rat cytosolic PEPCK in complex with 3-(carboxymethylthiol)-picolinic acid

7ZO2 | pdb_00007zo2

L1 metallo-beta-lactamase complex with hydrolysed doripenem

7ZO3 | pdb_00007zo3

L1 metallo-beta-lactamase in complex with hydrolysed tebipenem

7ZO4 | pdb_00007zo4

L1 metallo-beta-lactamase in complex with hydrolysed panipenem

7ZO5 | pdb_00007zo5

L1 metallo-beta-lactamase in complex with a mecillinam degradation product

7ZO6 | pdb_00007zo6

L1 metallo-beta-lactamase in complex with hydrolysed cefoxitin

7ZO7 | pdb_00007zo7

L1 metallo-beta-lactamase in complex with hydrolysed cefmetazole

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2Q99 | pdb_00002q99

3LCE | pdb_00003lce

5HH4 | pdb_00005hh4

5HH5 | pdb_00005hh5

5HH6 | pdb_00005hh6

5NDB | pdb_00005ndb

5NDE | pdb_00005nde

6P5O | pdb_00006p5o

7ZO2 | pdb_00007zo2

7ZO3 | pdb_00007zo3

7ZO4 | pdb_00007zo4

7ZO5 | pdb_00007zo5

7ZO6 | pdb_00007zo6

7ZO7 | pdb_00007zo7