RCSB PDB: Search

4OCR \| pdb_00004ocr	Download File View File

Crystal structure of human Fab CAP256-VRC26.01, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 1.895 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.01 heavy chain (protein) CAP256-VRC26.01 light chain (protein)

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4OCS \| pdb_00004ocs	Download File View File

Crystal structure of human Fab CAP256-VRC26.10, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 1.901 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.10 heavy chain (protein) CAP256-VRC26.10 light chain (protein)

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4OCW \| pdb_00004ocw	Download File View File

Crystal structure of human Fab CAP256-VRC26.06, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.06 heavy chain (protein) CAP256-VRC26.06 light chain (protein)

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4OD1 \| pdb_00004od1	Download File View File

Crystal structure of human Fab CAP256-VRC26.03, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.03 heavy chain (protein) CAP256-VRC26.03 light chain (protein)

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4OD3 \| pdb_00004od3	Download File View File

Crystal structure of human Fab CAP256-VRC26.07, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.616 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.07 heavy chain (protein) CAP256-VRC26.07 light chain (protein)
Unique Ligands	MES, ZN

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4ODH \| pdb_00004odh	Download File View File

Crystal structure of human Fab CAP256-VRC26.UCA, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.894 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.UCA heavy chain (protein) CAP256-VRC26.UCA light chain (protein)

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4OLU \| pdb_00004olu	Download File View File

Crystal structure of antibody VRC07 in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OLV \| pdb_00004olv	Download File View File

Crystal structure of antibody VRC07-G54F in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OLW \| pdb_00004olw	Download File View File

Crystal structure of antibody VRC07-G54H in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.709 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OLX \| pdb_00004olx	Download File View File

Crystal structure of antibody VRC07-G54L in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OLY \| pdb_00004oly	Download File View File

Crystal structure of antibody VRC07-G54R in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.351 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OLZ \| pdb_00004olz	Download File View File

Crystal structure of antibody VRC07-G54W in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OM0 \| pdb_00004om0	Download File View File

Crystal structure of antibody VRC07-G54Y in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.289 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4OM1 \| pdb_00004om1	Download File View File

Crystal structure of antibody VRC07-I30Q, G54W, S58N in complex with clade A/E 93TH057 HIV-1 gp120 core

Kwon, Y.D., Kwong, P.D.

(2014) J Virol 88: 12669-12682

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.131 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antigen binding fragment of heavy chain: Antibody VRC01 (protein) Antigen binding fragment of light chain: Antibody VRC01 (protein) Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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4ORG \| pdb_00004org	Download File View File

Crystal structure of human Fab CAP256-VRC26.04, a potent V1V2-directed HIV-1 neutralizing antibody

Gorman, J., Doria-Rose, N.A., Schramm, C.A., Moore, P.L., Mascola, J.R., Shapiro, L., Morris, L., Kwong, P.D.

(2014) Nature 509: 55-62

Released	2014-02-26
Method	X-RAY DIFFRACTION 3.121 Å
Organisms	Homo sapiens
Macromolecule	CAP256-VRC26.04 heavy chain (protein) CAP256-VRC26.04 light chain (protein)

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4RWY \| pdb_00004rwy	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC131 in complex with HIV-1 clade B YU2 gp120

Acharya, P., Luongo, T.S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.128 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 8ANC131 Heavy chain (protein) Antibody 8ANC131 Light chain (protein) HIV-1 YU2 gp120 (protein)
Unique Ligands	EDO, EPE, NA, NAG

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4RX4 \| pdb_00004rx4	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC134 in complex with HIV-1 clade A Q842.d12 gp120

Zhou, T., Acharya, P., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	8ANC134 Heavy chain (protein) 8ANC134 Light Chain (protein) HIV-1 Clade A Q842.d12 gp120 (protein)
Unique Ligands	EDO, NAG, SO4

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4TOY \| pdb_00004toy	Download File View File

Structure of 35O22 Fab, a HIV-1 neutralizing antibody

Pancera, M., Kwong, P.D.

(2014) Nature 515: 138-142

Released	2014-09-03
Method	X-RAY DIFFRACTION 1.551 Å
Organisms	Homo sapiens
Macromolecule	35O22 Fab Heavy chain (protein) 35O22 Fab Light chain (protein)

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4TVP \| pdb_00004tvp	Download File View File

Crystal Structure of the HIV-1 BG505 SOSIP.664 Env Trimer Ectodomain, Comprising Atomic-Level Definition of Pre-Fusion gp120 and gp41, in Complex with Human Antibodies PGT122 and 35O22

Pancera, M., Zhou, T., Kwong, P.D.

(2014) Nature 514: 455-461

Released	2014-10-08
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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4YDI \| pdb_00004ydi	Download File View File

Crystal structure of broad and potently neutralizing VRC01-class antibody Z258-VRC27.01, isolated from human donor Z258, in complex with HIV-1 gp120 from clade A strain Q23.17

Zhou, T., Srivatsan, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 3.452 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY Z258-VRC27.01 (protein) LIGHT CHAIN OF ANTIBODY Z258-VRC27.01 (protein)
Unique Ligands	EDO, NAG, SO4

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4YDJ \| pdb_00004ydj	Download File View File

Crystal structure of broadly and potently neutralizing antibody 44-VRC13.01 in complex with HIV-1 clade AE strain 93TH057 gp120

Zhou, T., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.308 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY 44-VRC13.01 (protein) LIGHT CHAIN OF ANTIBODY 44-VRC13.01 (protein)
Unique Ligands	BU3, CL, IPA, NA, NAG, PEG

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4YDK \| pdb_00004ydk	Download File View File

Crystal structure of broadly and potently neutralizing antibody C38-VRC16.01 in complex with HIV-1 clade AE strain 93TH057 gp120

Zhou, T., Moquin, S., Zheng, A., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 2.051 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY C38-VRC16.01 (protein) LIGHT CHAIN OF ANTIBODY C38-VRC16.01 (protein)
Unique Ligands	GOL, NAG, NHE, PEG

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4YDL \| pdb_00004ydl	Download File View File

Crystal structure of broadly and potently neutralizing antibody C38-VRC18.02 in complex with HIV-1 clade AE strain 93TH057gp120

Zhou, T., Srivatsan, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein) HEAVY CHAIN OF ANTIBODY C38-VRC18.02 (protein) LIGHT CHAIN OF ANTIBODY C38-VRC18.02 (protein)
Unique Ligands	EPE, NAG, SO4

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4YE4 \| pdb_00004ye4	Download File View File

Crystal Structure of Neutralizing Antibody HJ16 in Complex with HIV-1 gp120

Kwong, P.D., Chen, L., Zhou, T.

(2015) Cell 161: 1280-1292

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	HT593.1 gp120 (protein) Heavy chain human antibody HJ16 (protein) Light chain of HJ16 (protein)
Unique Ligands	NAG

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4YFL \| pdb_00004yfl	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 1B2530 in complex with HIV-1 clade A/E 93TH057 gp120

Acharya, P., Zhou, T., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 3.387 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	1B2530 Light chain (protein) 1B2530 heavy chain (protein) Envelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4OCR | pdb_00004ocr

4OCS | pdb_00004ocs

4OCW | pdb_00004ocw

4OD1 | pdb_00004od1

4OD3 | pdb_00004od3

4ODH | pdb_00004odh

4OLU | pdb_00004olu

4OLV | pdb_00004olv

4OLW | pdb_00004olw

4OLX | pdb_00004olx

4OLY | pdb_00004oly

4OLZ | pdb_00004olz

4OM0 | pdb_00004om0

4OM1 | pdb_00004om1

4ORG | pdb_00004org

4RWY | pdb_00004rwy

4RX4 | pdb_00004rx4

4TOY | pdb_00004toy

4TVP | pdb_00004tvp

4YDI | pdb_00004ydi

4YDJ | pdb_00004ydj

4YDK | pdb_00004ydk

4YDL | pdb_00004ydl

4YE4 | pdb_00004ye4

4YFL | pdb_00004yfl