RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Fonseca, R."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (12)
	Lama glama (3)
	synthetic construct (2)
	Mus musculus (1)
	Serratia fonticola (1)

Taxonomy

	Eukaryota (12)
	other sequences (2)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (9)
	ELECTRON MICROSCOPY (4)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (3)
	2.0 - 2.5 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (3)

Release Date

2015 - 2019 (13)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (2)

Membrane Protein Annotation

	mpstruc (7)
	MemProtMD (4)
	OPM (4)
	PDBTM (4)

Symmetry Type

	Asymmetric (11)
	Cyclic (2)

SCOP Classification

	All alpha proteins (3)
	Artifacts (2)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 13 of 13 Structures

Page 1 of 1

Sort by

Explore in 3D

6DMG \| pdb_00006dmg	Download File View File

A multiconformer ligand model of EK6 bound to ERK2

Hudson, B.M., van Zundert, G.C.P., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.

(2018) J Med Chem 61: 11183-11198

Released	2018-12-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	EDO, EK6, SO4

Explore in 3D

6DMH \| pdb_00006dmh	Download File View File

A multiconformer ligand model of acylenzyme intermediate of meropenem bound to an SFC-1 E166A mutant

Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.

(2018) J Med Chem 61: 11183-11198

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Serratia fonticola
Macromolecule	Beta-lactamase (protein)
Unique Ligands	EDO, MER

Explore in 3D

6DMI \| pdb_00006dmi	Download File View File

A multiconformer ligand model of 5T5 bound to BACE-1

Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.

(2018) J Med Chem 61: 11183-11198

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Beta-secretase 1 (protein)
Unique Ligands	5T5, DMS, NA

Explore in 3D

6DMJ \| pdb_00006dmj	Download File View File

A multiconformer ligand model of inhibitor 53W bound to CREB binding protein bromodomain

Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.

(2018) J Med Chem 61: 11183-11198

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	53W

Explore in 3D

6DMK \| pdb_00006dmk	Download File View File

A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the bromodomain of human CREBBP

Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.

(2018) J Med Chem 61: 11183-11198

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	CREB-binding protein (protein)
Unique Ligands	2LL, EDO, NO3

Explore in 3D

6DML \| pdb_00006dml	Download File View File

A multiconformer ligand model of 3,5 dimethylisoxaxole bound to the bromodomain of human BRD4

Hudson, B.M., van Zundert, G., Keedy, D.A., Fonseca, R., Heliou, A., Suresh, P., Borrelli, K., Day, T., Fraser, J.S., van den Bedem, H.

(2018) J Med Chem 61: 11183-11198

Released	2018-12-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 4 (protein)
Unique Ligands	9BM, EDO

Explore in 3D

6N4X \| pdb_00006n4x	Download File View File

Metabotropic Glutamate Receptor 5 Apo Form Ligand Binding Domain

Koehl, A., Hu, H., Feng, D., Sun, B., Weis, W.I., Skiniotis, G.S., Mathiesen, J.M., Kobilka, B.K.

(2019) Nature 566: 79-84

Released	2019-01-23
Method	X-RAY DIFFRACTION 4 Å
Organisms	Homo sapiens
Macromolecule	Metabotropic glutamate receptor 5 (protein)
Unique Ligands	MG, NAG

Explore in 3D

6N4Y \| pdb_00006n4y	Download File View File

Metabotropic Glutamate Receptor 5 Extracellular Domain with Nb43

Koehl, A., Hu, H., Feng, D., Sun, B., Chu, M., Weis, W.I., Mathiesen, J.M., Skiniotis, G., Kobilka, B.K.

(2019) Nature 566: 79-84

Released	2019-01-23
Method	X-RAY DIFFRACTION 3.262 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Metabotropic glutamate receptor 5 (protein) Nanobody 43 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

Explore in 3D

6N50 \| pdb_00006n50	Download File View File

Metabotropic Glutamate Receptor 5 Extracellular Domain in Complex with Nb43 and L-quisqualic acid

Koehl, A., Hu, H., Feng, D., Sun, B., Chu, M., Weis, W.I., Skiniotis, G., Mathiesen, J.M., Kobilka, B.K.

(2019) Nature 566: 79-84

Released	2019-01-23
Method	X-RAY DIFFRACTION 3.751 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Metabotropic glutamate receptor 5 (protein) Nanobody 43 (protein)
Unique Ligands	NAG, QUS

Explore in 3D

6N51 \| pdb_00006n51	Download File View File

Metabotropic Glutamate Receptor 5 bound to L-quisqualate and Nb43

Koehl, A., Hu, H., Feng, D., Sun, B., Weis, W.I., Skiniotis, G.S., Mathiesen, J.M., Kobilka, B.K.

(2019) Nature 566: 79-84

Released	2019-01-23
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Metabotropic glutamate receptor 5 (protein) Nanobody 43 (protein)
Unique Ligands	NAG, QUS

Explore in 3D

6N52 \| pdb_00006n52	Download File View File

Metabotropic Glutamate Receptor 5 Apo Form

Koehl, A., Hu, H., Feng, D., Sun, B., Weis, W.I., Skiniotis, G.S., Mathiesen, J.M., Kobilka, B.K.

(2019) Nature 566: 79-84

Released	2019-01-23
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens
Macromolecule	Metabotropic glutamate receptor 5 (protein)
Unique Ligands	NAG

Explore in 3D

6OS9 \| pdb_00006os9	Download File View File

human Neurotensin Receptor 1 (hNTSR1) - Gi1 Protein Complex in canonical conformation (C state)

Kato, H.E., Zhang, Y., Kobilka, B.K., Skiniotis, G.

(2019) Nature 572: 80-85

Released	2019-07-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens Mus musculus synthetic construct
Macromolecule	Unique protein chains: 6

Explore in 3D

6OSA \| pdb_00006osa	Download File View File

human Neurotensin Receptor 1 (hNTSR1) - Gi1 Protein Complex in non-canonical conformation (NC state)

Kato, H.E., Zhang, Y., Kobilka, B.K., Skiniotis, G.

(2019) Nature 572: 80-85

Released	2019-07-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(i) subunit alpha-1 (protein) JMV449 (protein) Neurotensin receptor type 1 (protein)

1 to 13 of 13 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6DMG | pdb_00006dmg

A multiconformer ligand model of EK6 bound to ERK2

6DMH | pdb_00006dmh

A multiconformer ligand model of acylenzyme intermediate of meropenem bound to an SFC-1 E166A mutant

6DMI | pdb_00006dmi

A multiconformer ligand model of 5T5 bound to BACE-1

6DMJ | pdb_00006dmj

A multiconformer ligand model of inhibitor 53W bound to CREB binding protein bromodomain

6DMK | pdb_00006dmk

A multiconformer ligand model of an isoxazolyl-benzimidazole ligand bound to the bromodomain of human CREBBP

6DML | pdb_00006dml

A multiconformer ligand model of 3,5 dimethylisoxaxole bound to the bromodomain of human BRD4

6N4X | pdb_00006n4x

Metabotropic Glutamate Receptor 5 Apo Form Ligand Binding Domain

6N4Y | pdb_00006n4y

Metabotropic Glutamate Receptor 5 Extracellular Domain with Nb43

6N50 | pdb_00006n50

Metabotropic Glutamate Receptor 5 Extracellular Domain in Complex with Nb43 and L-quisqualic acid

6N51 | pdb_00006n51

Metabotropic Glutamate Receptor 5 bound to L-quisqualate and Nb43

6N52 | pdb_00006n52

Metabotropic Glutamate Receptor 5 Apo Form

6OS9 | pdb_00006os9

human Neurotensin Receptor 1 (hNTSR1) - Gi1 Protein Complex in canonical conformation (C state)

6OSA | pdb_00006osa

human Neurotensin Receptor 1 (hNTSR1) - Gi1 Protein Complex in non-canonical conformation (NC state)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

6DMG | pdb_00006dmg

6DMH | pdb_00006dmh

6DMI | pdb_00006dmi

6DMJ | pdb_00006dmj

6DMK | pdb_00006dmk

6DML | pdb_00006dml

6N4X | pdb_00006n4x

6N4Y | pdb_00006n4y

6N50 | pdb_00006n50

6N51 | pdb_00006n51

6N52 | pdb_00006n52

6OS9 | pdb_00006os9

6OSA | pdb_00006osa