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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gabdulkhakov, A.G."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Homo sapiens (7)
	Paenarthrobacter aurescens (4)

Taxonomy

	Eukaryota (7)
	Bacteria (4)

Experimental Method

	ELECTRON MICROSCOPY (7)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

	Protein (11)
	RNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)
	> 4.5 (4)

Release Date

	2015 - 2019 (4)
	2020 - 2024 (7)

Enzyme Classification Name

	Lyases (7)
	Hydrolases (1)

Membrane Protein Annotation

	MemProtMD (4)
	PDBTM (4)
	mpstruc (4)
	OPM (2)

Symmetry Type

	Cyclic (8)
	Asymmetric (3)

AllSelected

1 to 11 of 11 Structures

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6IRA \| pdb_00006ira	Download File View File

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 7.8

Zhang, J., Chang, S., Zhang, X., Zhu, S.

(2018) Cell Rep 25: 3582-3590.e4

Released	2019-01-16
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)

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6IRF \| pdb_00006irf	Download File View File

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class I

Zhang, J., Chang, S., Zhang, X., Zhu, S.

(2018) Cell Rep 25: 3582-3590.e4

Released	2019-01-16
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)

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6IRG \| pdb_00006irg	Download File View File

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class II

Zhang, J., Chang, S., Zhang, X., Zhu, S.

(2018) Cell Rep 25: 3582-3590.e4

Released	2019-01-16
Method	ELECTRON MICROSCOPY 5.5 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)

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6IRH \| pdb_00006irh	Download File View File

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class III

Zhang, J., Chang, S., Zhang, X., Zhu, S.

(2018) Cell Rep 25: 3582-3590.e4

Released	2019-01-16
Method	ELECTRON MICROSCOPY 7.8 Å
Organisms	Homo sapiens
Macromolecule	Glutamate receptor ionotropic, NMDA 1 (protein) Glutamate receptor ionotropic, NMDA 2A (protein)

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8XXL \| pdb_00008xxl	Download File View File

Cryo-EM structure of the human 40S ribosome with PDCD4

Ye, X., Huang, Z., Li, Y., Wang, M., Cheng, J.

(2024) Cell Res 34: 522-525

Released	2024-05-01
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 35 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

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8XXM \| pdb_00008xxm	Download File View File

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

Ye, X., Huang, Z., Li, Y., Wang, M., Cheng, J.

(2024) Cell Res 34: 522-525

Released	2024-05-01
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 36 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

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8XXN \| pdb_00008xxn	Download File View File

Cryo-EM structure of the human 43S ribosome with PDCD4

Ye, X., Huang, Z., Li, Y., Wang, M., Cheng, J.

(2024) Cell Res 34: 522-525

Released	2024-05-01
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 49 Unique nucleic acid chains: 1
Unique Ligands	MG, ZN

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9J4I \| pdb_00009j4i	Download File View File

Crystal structure of GH9l Inulin fructotransferases (IFTase) in compex with fruetosyl nystose (GF4)

Chen, G., Wang, Z.X., Yang, Y.Q., Li, Y.G., Zhang, T., Ouyang, S.Y., Zhang, L., Chen, Y., Ruan, X.L., Miao, M.

(2024) Int J Biol Macromol 277: 134446-134446

Released	2024-09-04
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Paenarthrobacter aurescens
Macromolecule	DFA-III-forming inulin fructotransferase (protein)
Unique branched monosaccharides	FRU, GLC

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9J4J \| pdb_00009j4j	Download File View File

Crystal structure of GH9l Inulin fructotransferases(IFTase)incomplex with nystose(F3)

Chen, G., Wang, Z.X., Yang, Y.Q., Li, Y.G., Zhang, T., Ouyang, S.Y., Zhang, L., Chen, Y., Ruan, X.L., Miao, M.

(2024) Int J Biol Macromol 277: 134446-134446

Released	2024-09-04
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Paenarthrobacter aurescens
Macromolecule	DFA-III-forming inulin fructotransferase (protein)
Unique Ligands	FRU
Unique branched monosaccharides	FRU, GLC

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9J4K \| pdb_00009j4k	Download File View File

Crystal structure of GH9l Inulinfructotransferases (IFTase) in complex with GF2

Chen, G., Wang, Z.X., Yang, Y.Q., Li, Y.G., Zhang, T., Ouyang, S.Y., Zhang, L., Chen, Y., Ruan, X.L., Miao, M.

(2024) Int J Biol Macromol 277: 134446-134446

Released	2024-09-04
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Paenarthrobacter aurescens
Macromolecule	DFA-III-forming inulin fructotransferase (protein)
Unique branched monosaccharides	FRU, GLC

Explore in 3D

9J4L \| pdb_00009j4l	Download File View File

Crystal structure of GH9l Inulin fructotransferases (IFTase)

Chen, G., Wang, Z.X., Yang, Y.Q., Li, Y.G., Zhang, T., Ouyang, S.Y., Zhang, L., Chen, Y., Ruan, X.L., Miao, M.

(2024) Int J Biol Macromol 277: 134446-134446

Released	2024-09-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Paenarthrobacter aurescens
Macromolecule	DFA-III-forming inulin fructotransferase (protein)

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6IRA | pdb_00006ira

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 7.8

6IRF | pdb_00006irf

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class I

6IRG | pdb_00006irg

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class II

6IRH | pdb_00006irh

Structure of the human GluN1/GluN2A NMDA receptor in the glutamate/glycine-bound state at pH 6.3, Class III

8XXL | pdb_00008xxl

Cryo-EM structure of the human 40S ribosome with PDCD4

8XXM | pdb_00008xxm

Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G

8XXN | pdb_00008xxn

Cryo-EM structure of the human 43S ribosome with PDCD4

9J4I | pdb_00009j4i

Crystal structure of GH9l Inulin fructotransferases (IFTase) in compex with fruetosyl nystose (GF4)

9J4J | pdb_00009j4j

Crystal structure of GH9l Inulin fructotransferases(IFTase)incomplex with nystose(F3)

9J4K | pdb_00009j4k

Crystal structure of GH9l Inulinfructotransferases (IFTase) in complex with GF2

9J4L | pdb_00009j4l

Crystal structure of GH9l Inulin fructotransferases (IFTase)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

6IRA | pdb_00006ira

6IRF | pdb_00006irf

6IRG | pdb_00006irg

6IRH | pdb_00006irh

8XXL | pdb_00008xxl

8XXM | pdb_00008xxm

8XXN | pdb_00008xxn

9J4I | pdb_00009j4i

9J4J | pdb_00009j4j

9J4K | pdb_00009j4k

9J4L | pdb_00009j4l