RCSB PDB: Search

2C1E \| pdb_00002c1e	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide Michael acceptor inhibitors.

Grutter, M.G.

(2006) J Med Chem 49: 5728

Released	2006-09-20
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE INHIBITOR (5S, 8R, 11S)-8-(2-CARBOXYETHYL)-5-(CARBOXYMETHYL)-14-(4-ETHOXY-4-OXOBUTANOYL)-11-(1-METHYLETHYL)-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,13,14-PENTAAZAHEXADECAN -16-OIC ACID (protein) CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)

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2C2K \| pdb_00002c2k	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide Michael acceptor inhibitors.

Ganesan, R., Jelakovic, S., Ekici, O.D., Li, Z.Z., James, K.E., Asgian, J.L., Campbell, A.J., Mikolajczyk, J., Salvesen, G.S., Gruetter, M.G., Powers, J.C.

(2006) J Med Chem 49: 5728

Released	2006-09-20
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE INHIBITOR (5S, 8R, 11S)-8-(2-CARBOXYETHYL)-5-(CARBOXYMETHYL)-14-(4-ETHOXY-4-OXOBUTANOYL)-11-(1-METHYLETHYL)-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,13,14-PENTAAZAHEXADECAN -16-OIC ACID (protein) CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)

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2C2M \| pdb_00002c2m	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide Michael acceptor inhibitors.

Ganesan, R., Jelakovic, S., Ekici, O.D., Li, Z.Z., James, K.E., Asgian, J.L., Campbell, A., Mikolajczyk, J., Salvesen, G.S., Gruetter, M.G., Powers, J.C.

(2006) J Med Chem 49: 5728

Released	2006-09-20
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE INHIBITOR (5S, 8R, 11S)-14-[4-(BENZYLOXY)-4-OXOBUTANOYL]-8-(2-CARBOXYETHYL)-5-(CARBOXYMETHYL)-11-(1-METHYLETHYL)-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,13,14 -PENTAAZAHEXADECAN-16-OIC ACID (protein) CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)

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2C2O \| pdb_00002c2o	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide Michael acceptor inhibitors.

Ganesan, R., Jelakovic, S., Ekici, O.D., Li, Z.Z., James, K.E., Asgian, J.L., Campbell, A., Mikolajczyk, J., Salvesen, G.S., Gruetter, M.G., Powers, J.C.

(2006) J Med Chem 49: 5728

Released	2006-09-20
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE INHIBITOR (5S, 8R, 11S)-14-{4-[BENZYL(METHYL) AMINO]-4-OXOBUTANOYL}-8-(2-CARBOXYETHYL)-5-(CARBOXYMETHYL)-11-(1-METHYLETHYL)-3,6,9,12-TETRAOXO-1-PHENYL-2-OXA-4,7,10,13,14-PENTAAZAHEXADECAN-16-OIC ACID (protein) CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)

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2C2Z \| pdb_00002c2z	Download File View File

Crystal structure of caspase-8 in complex with aza-peptide Michael acceptor inhibitor

Ganesan, R., Jelakovic, S., Ekici, O.D., Li, Z.Z., James, K.E., Asgian, J.L., Campbell, A.J., Mikolajczyk, J., Salvesen, G.S., Powers, J.C., Gruetter, M.G.

(2006) J Med Chem 49: 5728

Released	2006-09-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE INHIBITOR (5S, 8R, 11S)-8-(2-CARBOXYETHYL) -14-[4-(3,4-DIHYDROQUINOLIN-1(2H)-YL)-4-OXOBUTANOYL] -11-[(1R)-1-HYDROXYETHYL]-5-(2-METHYLPROPYL)-3,6,9,12-TETRAOXO -1-PHENYL-2-OXA-4,7,10,13,14-PENTAAZAHEXADECAN-16-OIC ACID (protein) CASPASE-8 P10 SUBUNIT (protein) CASPASE-8 P18 SUBUNIT (protein)
Unique Ligands	DTD

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2CDR \| pdb_00002cdr	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.

Ganesan, R., Jelakovic, S., Campbell, A.J., Li, Z.Z., Asgian, J.L., Powers, J.C., Gruetter, M.G.

(2006) Biochemistry 45: 9059

Released	2007-03-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	AZA-PEPTIDE EXPOXIDE (protein) CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)

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2CJX \| pdb_00002cjx	Download File View File

Extended substrate recognition in caspase-3 revealed by high resolution X-ray structure analysis

Ganesan, R., Mittl, P.R.E., Jelakovic, S., Grutter, M.G.

(2006) J Mol Biology 359: 1378

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CASPASE-3 (protein) PHQ-ASP-GLU-VAL-ASP-CHLOROMETHYLKETONE (protein)

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2CJY \| pdb_00002cjy	Download File View File

Extended substrate recognition in caspase-3 revealed by high resolution X-ray structure analysis

Ganesan, R., Mittl, P.R.E., Jelakovic, S., Grutter, M.G.

(2006) J Mol Biology 359: 1378

Released	2006-06-27
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	CASPASE-3 (protein) PHQ-ASP-GLU-VAL-ASP-CHLOROMETHYLKETONE (protein)

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2CNK \| pdb_00002cnk	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.

Ganesan, R., Jelakovic, S., Campbell, A.J., Li, Z.Z., Asgian, J.L., Powers, J.C., Grutter, M.G.

(2006) Biochemistry 45: 9059

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE EXPOXIDE (protein) CASPASE-3 P12 SUBUNIT (protein) CASPASE-3 P17 SUBUNIT (protein)

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2CNL \| pdb_00002cnl	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.

Ganesan, R., Jelakovic, S., Campbell, A.J., Li, Z.Z., Asgian, J.L., Grutter, M.G., Powers, J.C.

(2006) Biochemistry 45: 9059

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE EPOXIDE (protein) CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)

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2CNN \| pdb_00002cnn	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.

Ganesan, R., Jelakovic, S., Campbell, A.J., Li, Z.Z., Asgian, J.L., Powers, J.C., Grutter, M.G.

(2006) Biochemistry 45: 9059

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	AZA-PEPTIDE EXPOXIDE (protein) Caspase-3 (protein)

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2CNO \| pdb_00002cno	Download File View File

Crystal structures of caspase-3 in complex with aza-peptide epoxide inhibitors.

Ganesan, R., Jelakovic, S., Campbell, A.J., Li, Z.Z., Asgian, J.L., Powers, J.C., Grutter, M.G.

(2006) Biochemistry 45: 9059

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Aza-peptide epoxide (protein) Caspase-3 (protein)

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2DKO \| pdb_00002dko	Download File View File

Extended substrate recognition in caspase-3 revealed by high resolution X-ray structure analysis

Mittl, P.R.E., Ganesan, R., Jelakovic, S., Grutter, M.G.

(2006) J Mol Biology 359: 1378-1388

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Homo sapiens
Macromolecule	Caspase-3 (protein) PHQ-ASP-GLU-VAL-ASP-CHLOROMETHYLKETONE (protein)

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2R0K \| pdb_00002r0k	Download File View File

Protease domain of HGFA with inhibitor Fab58

Eigenbrot, C., Shia, S.

(2007) Proc Natl Acad Sci U S A 104: 19784-19789

Released	2007-12-25
Method	X-RAY DIFFRACTION 3.51 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor activator (protein) antibody heavy chain of Fab58, Fab portion only (protein) antibody light chain of Fab58 (protein)

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2R0L \| pdb_00002r0l	Download File View File

Short Form HGFA with Inhibitory Fab75

Eigenbrot, C., Shia, S.

(2007) Proc Natl Acad Sci U S A 104: 19784-19789

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Hepatocyte growth factor activator (protein) antibody heavy chain, Fab portion only (protein) antibody light chain (protein)
Unique branched monosaccharides	BMA, NAG

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2WUB \| pdb_00002wub	Download File View File

Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	FAB FRAGMENT FAB40.DELTATRP HEAVY CHAIN (protein) FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN (protein)
Unique branched monosaccharides	BMA, NAG

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2WUC \| pdb_00002wuc	Download File View File

Crystal structure of HGFA in complex with the allosteric non- inhibitory antibody Fab40.deltaTrp and Ac-KQLR-chloromethylketone

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-KQLR-CHLOROMETHYLKETONE INHIBITOR (protein) FAB FRAGMENT FAB40.DELTATRP HEAVY CHAIN (protein) FAB FRAGMENT FAB40.DELTATRP LIGHT CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR LONG CHAIN (protein) HEPATOCYTE GROWTH FACTOR ACTIVATOR SHORT CHAIN (protein)
Unique branched monosaccharides	NAG

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2XYG \| pdb_00002xyg	Download File View File

Caspase-3:CAS329306

Ganesan, R., Jelakovic, S., Grutter, M.G., Mittl, P.R.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 842

Released	2011-08-17
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)
Unique Ligands	TQ8

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2XYH \| pdb_00002xyh	Download File View File

Caspase-3:CAS60254719

Ganesan, R., Jelakovic, S., Grutter, M.G., Mittl, P.R.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 842

Released	2011-08-17
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)
Unique Ligands	TQ9

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2XYP \| pdb_00002xyp	Download File View File

Caspase-3:CAS26049945

Ganesan, R., Jelakovic, S., Grutter, M.G., Mittl, P.R.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 842

Released	2011-08-17
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Homo sapiens
Macromolecule	CASPASE-3 SUBUNIT P12 (protein) CASPASE-3 SUBUNIT P17 (protein)
Unique Ligands	XVE

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3K2U \| pdb_00003k2u	Download File View File

Crystal structure of HGFA in complex with the allosteric inhibitory antibody Fab40

Ganesan, R., Eigenbrot, C., Shia, S.

(2009) Structure 17: 1614-1624

Released	2009-12-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	Antibody, Fab fragment, Heavy Chain (protein) Antibody, Fab fragment, Light Chain (protein) Hepatocyte growth factor activator long chain (protein) Hepatocyte growth factor activator short chain (protein)
Unique branched monosaccharides	NAG

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3TJN \| pdb_00003tjn	Download File View File

HtrA1 catalytic domain, apo form

Eigenbrot, C., Ultsch, M.

(2012) Structure 20: 1040-1050

Released	2012-05-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)

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3TJO \| pdb_00003tjo	Download File View File

HtrA1 catalytic domain, mutationally inactivated

Eigenbrot, C., Ultsch, M.

(2012) Structure 20: 1040-1050

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.301 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)
Unique Ligands	BOG, GOL, SO4

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3TJQ \| pdb_00003tjq	Download File View File

N-domain of HtrA1

Eigenbrot, C., Ultsch, M.

(2012) Structure 20: 1040-1050

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Serine protease HTRA1 (protein)
Unique Ligands	CL, GOL, PT, SCN

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4D9Q \| pdb_00004d9q	Download File View File

Inhibiting Alternative Pathway Complement Activation by Targeting the Exosite on Factor D

Murray, J.M., Wiesmann, C.

(2012) J Biological Chem 287: 12886-12892

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens Macaca mulatta
Macromolecule	Anti-Factor D, heavy chain (protein) Anti-Factor D, light chain (protein) Factor D (protein)
Unique Ligands	GOL, SO4, ZN

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Structure Determination Methodology

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Experimental Method

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Refinement Resolution (Å)

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Enzyme Classification Name

Symmetry Type

SCOP Classification

2C1E | pdb_00002c1e

2C2K | pdb_00002c2k

2C2M | pdb_00002c2m

2C2O | pdb_00002c2o

2C2Z | pdb_00002c2z

2CDR | pdb_00002cdr

2CJX | pdb_00002cjx

2CJY | pdb_00002cjy

2CNK | pdb_00002cnk

2CNL | pdb_00002cnl

2CNN | pdb_00002cnn

2CNO | pdb_00002cno

2DKO | pdb_00002dko

2R0K | pdb_00002r0k

2R0L | pdb_00002r0l

2WUB | pdb_00002wub

2WUC | pdb_00002wuc

2XYG | pdb_00002xyg

2XYH | pdb_00002xyh

2XYP | pdb_00002xyp

3K2U | pdb_00003k2u

3TJN | pdb_00003tjn

3TJO | pdb_00003tjo

3TJQ | pdb_00003tjq

4D9Q | pdb_00004d9q