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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Gold, V.A.M."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (5)
	Mycobacterium tuberculosis (3)
	Actinomyces (1)
	Cryptococcus neoformans var. grubii (1)
	Cryptococcus neoformans var. grubii H99 (1)

Taxonomy

	Eukaryota (7)
	Bacteria (4)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

2020 - 2024 (10)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (2)

Symmetry Type

	Cyclic (7)
	Asymmetric (3)

SCOP Classification

All beta proteins (2)

AllSelected

1 to 10 of 10 Structures

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6R5H \| pdb_00006r5h	Download File View File

Major aspartyl peptidase 1 from C. neoformans

Krystufek, R., Sacha, P., Brynda, J., Konvalinka, J.

(2021) J Med Chem 64: 6706-6719

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Cryptococcus neoformans var. grubii H99
Macromolecule	Endopeptidase (protein)
Unique Ligands	1PE, ACY, EDO, NA, PEG, PG4, PGE, SO4
Unique branched monosaccharides	NAG

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6R6A \| pdb_00006r6a	Download File View File

Major aspartyl peptidase 1 from C. neoformans

Krystufek, R., Sacha, P., Brynda, J., Konvalinka, J.

(2021) J Med Chem 64: 6706-6719

Released	2021-04-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Actinomyces Cryptococcus neoformans var. grubii
Macromolecule	Endopeptidase (protein) Pepstatin (protein)
Unique Ligands	1PE, NA, PEG, PGE, SO4
Unique branched monosaccharides	NAG

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7ZSL \| pdb_00007zsl	Download File View File

human purine nucleoside phosphorylase in complex with JS-196

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	EDO, JTO, PEG, SO4

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7ZSM \| pdb_00007zsm	Download File View File

human purine nucleoside phosphorylase in complex with JS-375

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	CL, JU9, SO4

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7ZSN \| pdb_00007zsn	Download File View File

human purine nucleoside phosphorylase in complex with JS-379

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	JSI, SO4, TEW

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7ZSO \| pdb_00007zso	Download File View File

human purine nucleoside phosphorylase in complex with JS-554

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	GOL, JTC, NA, SO4

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7ZSP \| pdb_00007zsp	Download File View File

human purine nucleoside phosphorylase in complex with JS-555

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Homo sapiens
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	JT3, NA, TEW

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7ZSQ \| pdb_00007zsq	Download File View File

human purine nucleoside phosphorylase in complex with JS-555

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	EDO, GOL, JTO, P4K, PEG, TEW

Explore in 3D

7ZSR \| pdb_00007zsr	Download File View File

purine nucleoside phosphorylase in complex with JS-379

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-17
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	ACT, JSI

Explore in 3D

8C25 \| pdb_00008c25	Download File View File

purine nucleoside phosphorylase in complex with JS-375

Djukic, S., Pachl, P., Rezacova, P.

(2023) J Med Chem 66: 6652-6681

Released	2023-05-31
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Purine nucleoside phosphorylase (protein)
Unique Ligands	CL, GOL, JU9, NA

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

6R5H | pdb_00006r5h

Major aspartyl peptidase 1 from C. neoformans

6R6A | pdb_00006r6a

Major aspartyl peptidase 1 from C. neoformans

7ZSL | pdb_00007zsl

human purine nucleoside phosphorylase in complex with JS-196

7ZSM | pdb_00007zsm

human purine nucleoside phosphorylase in complex with JS-375

7ZSN | pdb_00007zsn

human purine nucleoside phosphorylase in complex with JS-379

7ZSO | pdb_00007zso

human purine nucleoside phosphorylase in complex with JS-554

7ZSP | pdb_00007zsp

human purine nucleoside phosphorylase in complex with JS-555

7ZSQ | pdb_00007zsq

human purine nucleoside phosphorylase in complex with JS-555

7ZSR | pdb_00007zsr

purine nucleoside phosphorylase in complex with JS-379

8C25 | pdb_00008c25

purine nucleoside phosphorylase in complex with JS-375

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6R5H | pdb_00006r5h

6R6A | pdb_00006r6a

7ZSL | pdb_00007zsl

7ZSM | pdb_00007zsm

7ZSN | pdb_00007zsn

7ZSO | pdb_00007zso

7ZSP | pdb_00007zsp

7ZSQ | pdb_00007zsq

7ZSR | pdb_00007zsr

8C25 | pdb_00008c25