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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Grigorieff, N."

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Search Summary

This query matches 95 Structures.

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Structure Determination Methodology

experimental (95)

Scientific Name of Source Organism

	Homo sapiens (18)
	Escherichia coli K-12 (16)
	Escherichia coli (13)
	Bos taurus (11)
	Rattus norvegicus (7)
	Saccharomyces cerevisiae (7)
	Simian rotavirus A strain RRV (7)
	Taura syndrome virus (7)
	Influenza A virus (A/Solomon Islands/3/2006(H1N1)) (5)
	Cereibacter sphaeroides (3)

More...

Taxonomy

	Eukaryota (46)
	Riboviria (33)
	Bacteria (29)
	Archaea (3)
	Duplodnaviria (2)
	other sequences (2)
	Monodnaviria (1)

Experimental Method

	ELECTRON MICROSCOPY (81)
	X-RAY DIFFRACTION (11)
	ELECTRON CRYSTALLOGRAPHY (3)

Polymer Entity Type

	Protein (95)
	RNA (31)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (2)
	2.5 - 3.0 (11)
	3.0 - 3.5 (17)
	3.5 - 4.0 (18)
	4.0 - 4.5 (10)
	> 4.5 (35)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (2)
	2005 - 2009 (6)
	2010 - 2014 (15)
	2015 - 2019 (55)
	2020 - 2024 (14)

Enzyme Classification Name

	Transferases (18)
	Hydrolases (20)
	Translocases (8)
	Oxidoreductases (2)

Membrane Protein Annotation

	PDBTM (18)
	MemProtMD (17)
	mpstruc (10)
	OPM (5)

Symmetry Type

	Asymmetric (52)
	Cyclic (25)
	Dihedral (10)
	Icosahedral (7)
	Helical (1)

SCOP Classification

	Low resolution protein structures (2)
	All beta proteins (6)
	Alpha and beta proteins (a+b) (1)
	Alpha and beta proteins (a/b) (1)
	Membrane and cell surface proteins and peptides (3)
	All alpha proteins (2)

AllSelected

1 to 25 of 95 Structures

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1AT9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY

Kimura, Y., Vassylyev, D.G., Miyazawa, A., Kidera, A., Matsushima, M., Mitsuoka, K., Murata, K., Hirai, T., Fujiyoshi, Y.

(1997) Nature 389: 206-211

Released	1998-09-16
Method	ELECTRON CRYSTALLOGRAPHY 2.8 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1XI4	Download File View File

Clathrin D6 Coat

Fotin, A., Cheng, Y., Sliz, P., Grigorieff, N., Harrison, S.C., Kirchhausen, T., Walz, T.

(2004) Nature 432: 573-579

Released	2004-11-02
Method	ELECTRON MICROSCOPY 7.9 Å
Organisms	Bos taurus
Macromolecule	Clathrin heavy chain (protein) Clathrin light chain A (protein)

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1XI5	Download File View File

Clathrin D6 coat with auxilin J-domain

Fotin, A., Cheng, Y., Grigorieff, N., Walz, T., Harrison, S.C., Kirchhausen, T.

(2004) Nature 432: 649-653

Released	2004-11-02
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Bos taurus
Macromolecule	Auxilin J-domain (protein) Clathrin heavy chain (protein)

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2AT9	Download File View File

STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY

Mitsuoka, K., Hirai, T., Murata, K., Miyazawa, A., Kidera, A., Kimura, Y., Fujiyoshi, Y.

(1999) J Mol Biol 286: 861-882

Released	1999-04-27
Method	ELECTRON CRYSTALLOGRAPHY 3 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	2DP, RET

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2BRD	Download File View File

CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN PURPLE MEMBRANE

Henderson, R., Grigorieff, N.

(1996) J Mol Biol 259: 393-421

Released	1996-06-10
Method	ELECTRON CRYSTALLOGRAPHY 3.5 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	DPG, RET

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2OM3	Download File View File

High-resolution cryo-EM structure of Tobacco Mosaic Virus

Sachse, C.

(2007) J Mol Biol 371: 812-835

Released	2007-10-16
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Tobacco mosaic virus
Macromolecule	Coat protein (protein) Tobacco Mosaic Virus RNA (nucleic acid)

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3DRX	Download File View File

X-ray crystal structure of human KCTD5 protein crystallized in high-salt buffer

Tereshko, V., Dementieva, I., Goldstein, S.A.N.

(2009) J Mol Biol 387: 175-191

Released	2009-02-17
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Homo sapiens
Macromolecule	BTB/POZ domain-containing protein KCTD5 (protein)

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3DRY	Download File View File

X-ray crystal structure of human KCTD5 protein crystallized in low-salt buffer

Tereshko, V., Dementieva, I., Goldstein, S.A.N.

(2009) J Mol Biol 387: 175-191

Released	2009-02-17
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	BTB/POZ domain-containing protein KCTD5 (protein)

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3DRZ	Download File View File

X-ray crystal structure of the N-terminal BTB domain of human KCTD5 protein

Tereshko, V., Dementieva, I., Goldstein, S.A.N.

(2009) J Mol Biol 387: 175-191

Released	2009-02-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	BTB/POZ domain-containing protein KCTD5 (protein)

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3GZT	Download File View File

VP7 recoated rotavirus DLP

Chen, J.Z., Settembre, E.C., Harrison, S.C., Grigorieff, N.

(2009) Proc Natl Acad Sci U S A 106: 10644-10648

Released	2009-07-14
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Simian rotavirus A strain RRV
Macromolecule	Outer capsid glycoprotein VP7 (protein)
Unique Ligands	CA
Unique branched monosaccharides	NAG

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3GZU	Download File View File

VP7 recoated rotavirus DLP

Chen, J.Z., Settembre, E.C., Harrison, S.C., Grigorieff, N.

(2009) Proc Natl Acad Sci U S A 106: 10644-10648

Released	2009-07-14
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Rotavirus A Simian rotavirus A strain RRV
Macromolecule	Inner capsid protein VP2 (protein) Intermediate capsid protein VP6 (protein)
Unique Ligands	ZN

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3IYJ	Download File View File

Bovine papillomavirus type 1 outer capsid

Wolf, M., Garcea, R.L., Grigorieff, N., Harrison, S.C.

(2010) Proc Natl Acad Sci U S A 107: 6298-6303

Released	2010-01-26
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Deltapapillomavirus 4
Macromolecule	Major capsid protein L1 (protein)

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3IYV	Download File View File

Clathrin D6 coat as full-length Triskelions

Johnson, G.T., Fotin, A., Cheng, Y., Sliz, P., Grigorieff, N., Harrison, S.C., Kirchhausen, T., Walz, T.

(2004) Nature 432: 573-579

Released	2010-07-21
Method	ELECTRON MICROSCOPY 7.9 Å
Organisms	Bos taurus
Macromolecule	Clathrin heavy chain (protein) Clathrin light chain A (protein)

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3IZ0	Download File View File

Human Ndc80 Bonsai Decorated Microtubule

Alushin, G.M., Ramey, V.H., Pasqualato, S., Ball, D.A., Grigorieff, N., Musacchio, A., Nogales, E.

(2010) Nature 467: 805-810

Released	2010-10-13
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	NDC80-SPC25 chimera protein, Chain B from PDB 2VE7 (Ndc80 bonsai) (protein) NUF2-SPC24 chimera protein, Chain D from PDB 2VE7 (Ndc80 bonsai) (protein) alpha tubulin, Chain A from PDB 1JFF (protein) beta tubulin, Chain B from PDB 1JFF (protein)
Unique Ligands	GDP, GTP, MG, TA1, ZN

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3J6X	Download File View File

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2014) Proc Natl Acad Sci U S A 111: 9139-9144

Released	2014-06-11
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Saccharomyces cerevisiae W303 Taura syndrome virus
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 5

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3J6Y	Download File View File

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Koh, C.S., Brilot, A.F., Grigorieff, N., Korostelev, A.A.

(2014) Proc Natl Acad Sci U S A 111: 9139-9144

Released	2014-06-11
Method	ELECTRON MICROSCOPY 6.1 Å
Organisms	Saccharomyces cerevisiae W303 Taura syndrome virus
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 5

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3J77	Download File View File

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.

(2014) Structure 22: 1210-1218

Released	2014-08-06
Method	ELECTRON MICROSCOPY 6.2 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 6

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3J78	Download File View File

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Svidritskiy, E., Brilot, A.F., Koh, C.S., Grigorieff, N., Korostelev, A.A.

(2014) Structure 22: 1210-1218

Released	2014-08-06
Method	ELECTRON MICROSCOPY 6.3 Å
Organisms	Escherichia coli Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 77 Unique nucleic acid chains: 6

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3J9S	Download File View File

Single particle cryo-EM structure of rotavirus VP6 at 2.6 Angstrom resolution

Grant, T., Grigorieff, N.

(2015) Elife 4: e06980-e06980

Released	2015-03-11
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Bovine rotavirus strain UK/G6
Macromolecule	Intermediate capsid protein VP6 (protein)
Unique Ligands	CA, CL, ZN

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4AU6	Download File View File

Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles

Estrozi, L.F., Settembre, E.C., Goret, G., McClain, B., Zhang, X., Chen, J.Z., Grigorieff, N., Harrison, S.C.

(2013) J Mol Biol 425: 124

Released	2012-06-13
Method	ELECTRON MICROSCOPY 6 Å
Organisms	Bovine rotavirus
Macromolecule	RNA-DEPENDENT RNA POLYMERASE (protein)

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4DFC	Download File View File

Core UvrA/TRCF complex

Deaconescu, A.M., Grigorieff, N.

(2012) Proc Natl Acad Sci U S A 109: 3353-3358

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.803 Å
Organisms	Escherichia coli K-12
Macromolecule	Transcription-repair-coupling factor (protein) UvrABC system protein A (protein)

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4F5X	Download File View File

Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles

Estrozi, L.F., Settembre, E.C., Goret, G., McClain, B., Zhang, X., Chen, J.Z., Grigorieff, N., Harrison, S.C.

(2013) J Mol Biol 425: 124-132

Released	2012-10-24
Method	X-RAY DIFFRACTION 5 Å
Organisms	Bovine rotavirus A Bovine rotavirus strain NCDV/G6 Simian 11 rotavirus (serotype 3 / strain SA11-Patton)
Macromolecule	Intermediate capsid protein VP6 (protein) RNA-directed RNA polymerase (protein) VP2 protein (protein)
Unique Ligands	ZN

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4PK2	Download File View File

tubulin acetyltransferase complex with bisubstrate analog

Szyk, A., Roll-Mecak, A.

(2014) Cell 157: 1405-1415

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACETYL-SER-(N-PROPANOYL-LYS)-ASP--THR-NH2 PEPTIDE (protein) Alpha-tubulin N-acetyltransferase 1 (protein)
Unique Ligands	COA

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4PK3	Download File View File

tubulin acetyltransferase complex with bisubstrate analog

Szyk, A., Roll-Mecak, A.

(2014) Cell 157: 1405-1415

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.347 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACETYL-SER-ASP-(N-ACETYL-LYS)-THR-NH2 PEPTIDE (protein) Alpha-tubulin N-acetyltransferase 1 (protein)
Unique Ligands	COA

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4V7C	Download File View File

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Brilot, A.F., Korostelev, A.A., Ermolenko, D.N., Grigorieff, N.

(2013) Proc Natl Acad Sci U S A 110: 20994-20999

Released	2014-07-09
Method	ELECTRON MICROSCOPY 7.6 Å
Organisms	Escherichia coli Escherichia coli K-12 Streptomyces
Macromolecule	Unique protein chains: 52 Unique nucleic acid chains: 5
Unique Ligands	ZN

1 to 25 of 95 Structures

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