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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hirano, Y."

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Search Summary

This query matches 67 Structures.

Refinements

Structure Determination Methodology

experimental (67)

Scientific Name of Source Organism

	Arabidopsis thaliana (10)
	Homo sapiens (10)
	Thermochromatium tepidum (10)
	Eisenia fetida (7)
	Mus musculus (6)
	Sus scrofa (5)
	Saccharomyces cerevisiae (4)
	Acidithiobacillus ferrooxidans (2)
	Escherichia coli (2)
	Oryza sativa Japonica Group (2)

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Taxonomy

	Eukaryota (48)
	Bacteria (17)
	Archaea (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (64)
	NEUTRON DIFFRACTION (4)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (67)
	DNA (1)

Refinement Resolution (Å)

	< 0.5 (1)
	0.5 - 1.0 (9)
	1.0 - 1.5 (9)
	1.5 - 2.0 (26)
	2.0 - 2.5 (11)
	2.5 - 3.0 (11)
	3.0 - 3.5 (3)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (8)
	2010 - 2014 (20)
	2015 - 2019 (16)
	2020 - 2024 (21)

Enzyme Classification Name

	Hydrolases (15)
	Transferases (6)
	Oxidoreductases (2)
	Isomerases (1)

Membrane Protein Annotation

	mpstruc (4)
	PDBTM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (49)
	Cyclic (18)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	All beta proteins (8)
	Artifacts (5)
	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (6)
	All alpha proteins (4)
	Small proteins (5)

AllSelected

1 to 25 of 67 Structures

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1VD2	Download File View File

Solution Structure of the PB1 domain of PKCiota

Hirano, Y., Yoshinaga, S., Yokochi, M., Ogura, K., Noda, Y., Sumimoto, H., Inagaki, F.

(2004) J Biol Chem 279: 31883-31890

Released	2004-09-14
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Protein kinase C, iota type (protein)

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1WMH	Download File View File

Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha

Hirano, Y., Yoshinaga, S., Suzuki, N.N., Horiuchi, M., Kohjima, M., Takeya, R., Sumimoto, H., Inagaki, F.

(2005) J Biol Chem 280: 9653-9661

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Partitioning defective-6 homolog alpha (protein) Protein kinase C, iota type (protein)

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2Z4H	Download File View File

Crystal structure of the Cpx pathway activator NlpE from Escherichia coli

Hirano, Y., Hossain, M.M., Takeda, K., Tokuda, H., Miki, K.

(2007) Structure 15: 963-976

Released	2007-09-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	Copper homeostasis protein cutF (protein)
Unique Ligands	SO4

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2Z4I	Download File View File

Crystal structure of the Cpx pathway activator NlpE from Escherichia coli

Hirano, Y., Hossain, M.M., Takeda, K., Tokuda, H., Miki, K.

(2007) Structure 15: 963-976

Released	2007-09-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	Copper homeostasis protein cutF (protein)
Unique Ligands	P6G, SO4

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2Z5B	Download File View File

Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly

Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.

(2008) Nat Struct Mol Biol 15: 228-236

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein YPL144W (protein) Uncharacterized protein YLR021W (protein)

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2Z5C	Download File View File

Crystal Structure of a Novel Chaperone Complex for Yeast 20S Proteasome Assembly

Yashiroda, H., Mizushima, T., Okamoto, K., Kameyama, T., Hayashi, H., Kishimoto, T., Kasahara, M., Kurimoto, E., Sakata, E., Suzuki, A., Hirano, Y., Murata, S., Kato, K., Yamane, T., Tanaka, K.

(2008) Nat Struct Mol Biol 15: 228-236

Released	2008-01-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Proteasome component PUP2 (protein) Protein YPL144W (protein) Uncharacterized protein YLR021W (protein)

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2Z5E	Download File View File

Crystal Structure of Proteasome Assembling Chaperone 3

Okamoto, K., Kurimoto, E., Sakata, E., Suzuki, A., Yamane, T., Hirano, Y., Murata, S., Tanaka, K., Kato, K.

(2008) Nat Struct Mol Biol 15: 228-236

Released	2008-02-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Proteasome Assembling Chaperone 3 (protein)

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2ZSH	Download File View File

Structural basis of gibberellin(GA3)-induced DELLA recognition by the gibberellin receptor

Murase, K., Hirano, Y., Sun, T.P., Hakoshima, T.

(2008) Nature 456: 459-463

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	DELLA protein GAI (protein) Probable gibberellin receptor GID1L1 (protein)
Unique Ligands	GA3

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2ZSI	Download File View File

Structural basis of gibberellin(GA4)-induced DELLA recognition by the gibberellin receptor

Murase, K., Hirano, Y., Sun, T.P., Hakoshima, T.

(2008) Nature 456: 459-463

Released	2008-11-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	DELLA protein GAI (protein) Probable gibberellin receptor GID1L1 (protein)
Unique Ligands	GA4

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3A38	Download File View File

Crystal structure of high-potential iron-sulfur protein from Thermochromatium tepidum at 0.7 angstrom resolution

Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.

(2010) J Struct Biol 169: 135-144

Released	2010-01-26
Method	X-RAY DIFFRACTION 0.7 Å
Organisms	Thermochromatium tepidum
Macromolecule	High-potential iron-sulfur protein (protein)
Unique Ligands	GOL, SF4, SO4

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3A39	Download File View File

Crystal Structure of High-Potential Iron-Sulfur Protein from Thermochromatium tepidum at 0.72 angstrom resolution

Takeda, K., Kusumoto, K., Hirano, Y., Miki, K.

(2010) J Struct Biol 169: 135-144

Released	2009-10-27
Method	X-RAY DIFFRACTION 0.72 Å
Organisms	Thermochromatium tepidum
Macromolecule	High-potential iron-sulfur protein (protein)
Unique Ligands	GOL, SF4, SO4

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3A9F	Download File View File

Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum

Hirano, Y., Higuchi, M., Azai, C., Oh-oka, H., Miki, K., Wang, Z.-Y.

(2010) J Mol Biol 397: 1175-1187

Released	2010-03-02
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Chlorobaculum tepidum
Macromolecule	Cytochrome c (protein)
Unique Ligands	HEC, NA, P33, PG4, PGE, SO4

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3AAB	Download File View File

Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form I crystal

Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.

(2011) J Struct Biol 174: 92-99

Released	2010-11-17
Method	X-RAY DIFFRACTION 1.851 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	Putative uncharacterized protein ST1653 (protein)
Unique Ligands	GOL, IPA

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3AAC	Download File View File

Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form II crystal

Takeda, K., Hayashi, T., Abe, T., Hirano, Y., Hanazono, Y., Yohda, M., Miki, K.

(2011) J Struct Biol 174: 92-99

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Sulfurisphaera tokodaii str. 7
Macromolecule	Putative uncharacterized protein ST1653 (protein)

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3AU4	Download File View File

Structure of the human myosin-X MyTH4-FERM cassette bound to its specific cargo, DCC

Hirano, Y., Hatano, T., Hakoshima, T.

(2011) EMBO J 30: 2734-2747

Released	2011-07-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Myosin-X (protein) Netrin receptor DCC (protein)

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3AU5	Download File View File

Structure of the human myosin-X MyTH4-FERM cassette

Hirano, Y., Takahashi, A., Hakoshima, T.

(2011) EMBO J 30: 2734-2747

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Myosin-X (protein)

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3VRC	Download File View File

Crystal structure of cytochrome c' from Thermochromatium tepidum

Hirano, Y., Kimura, Y., Suzuki, H., Miki, K., Wang, Z.-Y.

(2012) Biochemistry 51: 6556-6567

Released	2012-09-12
Method	X-RAY DIFFRACTION 1 Å
Organisms	Thermochromatium tepidum
Macromolecule	Cytochrome c' (protein)
Unique Ligands	CD, CL, HEC, PEG, PG4

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3VRD	Download File View File

Crystal structure of flavocytochrome c from Thermochromatium tepidum

Hirano, Y., Kimura, Y., Suzuki, H., Miki, K., Wang, Z.-Y.

(2012) Biochemistry 51: 6556-6567

Released	2012-09-12
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermochromatium tepidum
Macromolecule	Flavocytochrome c flavin subunit (protein) Flavocytochrome c heme subunit (protein)
Unique Ligands	FAD, GOL, HEC, NO3

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3W04	Download File View File

Crystal structure of Oryza sativa DWARF14 (D14)

Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.

(2013) Genes Cells 18: 147-160

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Dwarf 88 esterase (protein)
Unique Ligands	EDO, EPE, MPD

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3W05	Download File View File

Crystal structure of Oryza sativa DWARF14 (D14) in complex with PMSF

Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.

(2013) Genes Cells 18: 147-160

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Dwarf 88 esterase (protein)
Unique Ligands	EDO, PMS

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3W06	Download File View File

Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L)

Kagiyama, M., Hirano, Y., Mori, T., Kim, S.Y., Kyozuka, J., Seto, Y., Yamaguchi, S., Hakoshima, T.

(2013) Genes Cells 18: 147-160

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Arabidopsis thaliana
Macromolecule	Hydrolase, alpha/beta fold family protein (protein)
Unique Ligands	EDO