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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hoppe, N."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (11)
	Lama glama (6)
	synthetic construct (4)
	Pseudomonas putida DOT-T1E (3)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Mus musculus (2)
	Escherichia coli (1)
	Pyrococcus abyssi GE5 (1)

Taxonomy

	Eukaryota (12)
	Bacteria (4)
	other sequences (4)
	Riboviria (3)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (14)
	X-RAY DIFFRACTION (4)

Polymer Entity Type

Protein (18)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (8)
	3.0 - 3.5 (4)
	3.5 - 4.0 (1)

Release Date

	2020 - 2024 (14)
	2025 - 2029 (4)

Enzyme Classification Name

Hydrolases (6)

Membrane Protein Annotation

	PDBTM (11)
	mpstruc (6)
	OPM (6)
	MemProtMD (3)

Symmetry Type

	Asymmetric (13)
	Cyclic (5)

AllSelected

1 to 18 of 18 Structures

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7K1A	Download File View File

TtgR quadruple mutant (C137I I141W M167L F168Y)

Bingman, C.A., Nishikawa, K.K., Smith, R.W., Raman, S.

(2021) Nat Commun 12: 5562-5562

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pseudomonas putida DOT-T1E
Macromolecule	HTH-type transcriptional regulator TtgR (protein)
Unique Ligands	MG

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7K1C	Download File View File

TtgR in complex with resveratrol

Bingman, C.A., Nishikawa, K.K., Smith, R.W., Raman, S.

(2021) Nat Commun 12: 5562-5562

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida DOT-T1E
Macromolecule	HTH-type transcriptional regulator TtgR (protein)
Unique Ligands	MG, STL

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7KD8	Download File View File

TtgR C137I I141W M167L F168Y mutant in complex with resveratrol

Bingman, C.A., Nishikawa, K.K., Smith, R.W., Raman, S.

(2021) Nat Commun 12: 5562-5562

Released	2021-10-06
Method	X-RAY DIFFRACTION 1.71 Å
Organisms	Pseudomonas putida DOT-T1E
Macromolecule	HTH-type transcriptional regulator TtgR (protein)
Unique Ligands	MG, STL

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7KDT	Download File View File

Human Tom70 in complex with SARS CoV2 Orf9b

QCRG Structural Biology Consortium

(2020) Science 370:

Released	2020-10-21
Method	ELECTRON MICROSCOPY 3.05 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Mitochondrial import receptor subunit TOM70 (protein) ORF9b protein (protein)

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7KKJ	Download File View File

Structure of anti-SARS-CoV-2 Spike nanobody mNb6

Schoof, M.S., Faust, B.F., Saunders, R.A., Sangwan, S., Rezelj, V., Hoppe, N., Boone, M., Billesboelle, C.B., Puchades, C., Azumaya, C.M., Kratochvil, H.T., Zimanyi, M., Desphande, I., Liang, J., Dickinson, S., Nguyen, H.C., Chio, C.M., Merz, G.E., Thompson, M.C., Diwanji, D., Schaefer, K., Anand, A.A., Dobzinski, N., Zha, B.S., Simoneau, C.R., Leon, K., White, K.M., Chio, U.S., Gupta, M., Jin, M., Li, F., Liu, Y., Zhang, K., Bulkley, D., Sun, M., Smith, A.M., Rizo, A.N., Moss, F., Brilot, A.F., Pourmal, S., Trenker, R., Pospiech, T., Gupta, S., Barsi-Rhyne, B., Belyy, V., Barile-Hill, A.W., Nock, S., Liu, Y., Krogan, N.J., Ralston, C.Y., Swaney, D.L., Garcia-Sastre, A., Ott, M., Vignuzzi, M., Walter, P., Manglik, A., QCRG Structural Biology Consortium

(2020) Science 370: 1473-1479

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	synthetic construct
Macromolecule	Synthetic nanobody mNb6 (protein)
Unique Ligands	CL, SO4

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7KKK	Download File View File

SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6

(2020) Science 370: 1473-1479

Released	2020-11-11
Method	ELECTRON MICROSCOPY 3.03 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike glycoprotein (protein) Synthetic nanobody Nb6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7KKL	Download File View File

SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6

(2020) Science 370: 1473-1479

Released	2020-11-11
Method	ELECTRON MICROSCOPY 2.85 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	Spike glycoprotein (protein) Synthetic nanobody mNb6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7T32	Download File View File

CryoEM structure of the adenosine 2A receptor-BRIL/Anti BRIL Fab complex with ZM241385

Zhang, K.H., Wu, H., Hoppe, N., Manglik, A., Cheng, Y.F.

(2022) Nat Commun 13: 4366-4366

Released	2022-08-10
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a/Soluble cytochrome b562 Fusion Protein (protein)
Unique Ligands	ZMA

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7T9I	Download File View File

Native human TSH bound to human Thyrotropin receptor in complex with miniGs399 (composite structure)

Faust, B., Cheng, Y., Manglik, A.

(2022) Nature 609: 846-853

Released	2022-08-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7T9M	Download File View File

Human Thyrotropin receptor bound by CS-17 Inverse Agonist Fab/Org 274179-0 Antagonist

Faust, B., Cheng, Y., Manglik, A.

(2022) Nature 609: 846-853

Released	2022-08-10
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	CS-17 Heavy Chain (protein) CS-17 Light Chain (protein) Thyrotropin receptor (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7T9N	Download File View File

M22 Agonist Autoantibody bound to Human Thyrotropin receptor in complex with miniGs399 (composite structure)

Faust, B., Cheng, Y., Manglik, A.

(2022) Nature 609: 846-853

Released	2022-08-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG, Z41

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7UTZ	Download File View File

Human thyrotropin analog TR1402 bound to human Thyrotropin receptor in complex with miniGs399 (composite structure)

Faust, B., Cheng, Y., Manglik, A.

(2022) Nature 609: 846-853

Released	2022-08-03
Method	ELECTRON MICROSCOPY 2.4 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG, Z41

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8CXO	Download File View File

Cryo-EM structure of the unliganded mSMO-PGS2 in a lipidic environment

Zhang, K., Wu, H., Hoppe, N., Manglik, A., Cheng, Y.

(2022) Nat Commun 13: 4366-4366

Released	2022-08-03
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Mus musculus Pyrococcus abyssi GE5
Macromolecule	Smoothened homolog, GlgA glycogen synthase chimera (protein)
Unique Ligands	CLR

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8SMV	Download File View File

GPR161 Gs heterotrimer

Hoppe, N., Manglik, A., Harrison, S.

(2024) Nat Struct Mol Biol 31: 667-677

Released	2024-02-21
Method	ELECTRON MICROSCOPY 2.74 Å
Organisms	Homo sapiens Lama glama
Macromolecule	G-protein coupled receptor 161 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody 35 (protein)
Unique Ligands	CLR

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9BHL	Download File View File

Human proton sensing receptor GPR65 in complex with miniGs

Howard, M.K., Hoppe, N., Huang, X.P., Macdonald, C.B., Mehrotra, E., Rockefeller Grimes, P., Zahm, A.M., Trinidad, D.D., English, J., Coyote-Maestas, W., Manglik, A.

(2025) Cell 188: 671

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody 35 (protein) Psychosine receptor (protein)

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9BHM	Download File View File

Human proton sensing receptor GPR68 in complex with miniGs

Howard, M.K., Hoppe, N., Huang, X.P., Macdonald, C.B., Mehrotra, E., Rockefeller Grimes, P., Zahm, A.M., Trinidad, D.D., English, J., Coyote-Maestas, W., Manglik, A.

(2025) Cell 188: 671

Released	2025-01-22
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Lama glama
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Guanine nucleotide-binding protein G(s) subunit alpha isoforms short (protein) Nanobody 35 (protein) Ovarian cancer G-protein coupled receptor 1 (protein)
Unique Ligands	Y01

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9BI6	Download File View File

Human proton sensing receptor GPR68 in complex with miniGsq

Howard, M.K., Hoppe, N., Huang, X.P., Macdonald, C.B., Mehrotra, E., Rockefeller Grimes, P., Zahm, A.M., Trinidad, D.D., English, J., Coyote-Maestas, W., Manglik, A.

(2025) Cell 188: 671-687.e20

Released	2025-01-15
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Lama glama synthetic construct
Macromolecule	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Nb35 (protein) Ovarian cancer G-protein coupled receptor 1 (protein) miniGsq (protein)
Unique Ligands	Y01

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9BIP	Download File View File

Human proton sensing receptor GPR4 in complex with miniGs

Howard, M.K., Hoppe, N., Huang, X.P., Macdonald, C.B., Mehrotra, E., Rockefeller Grimes, P., Zahm, A.M., Trinidad, D.D., English, J., Coyote-Maestas, W., Manglik, A.

(2025) Cell 188: 671-687.e20

Released	2025-01-15
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Lama glama
Macromolecule	G-protein coupled receptor 4 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 (protein) Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 (protein) Nb35 (protein) miniGs (protein)

1 to 18 of 18 Structures

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