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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Ikeuchi, M."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Thermosynechococcus vestitus BP-1 (5)
	Nostoc sp. PCC 7120 = FACHB-418 (3)
	Synechocystis sp. PCC 6803 (1)

Taxonomy

Bacteria (9)

Experimental Method

	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

Oxidoreductases (4)

Membrane Protein Annotation

	PDBTM (3)
	mpstruc (3)
	OPM (1)
	MemProtMD (1)

Symmetry Type

	Asymmetric (5)
	Cyclic (4)
	Dihedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)
	Artifacts (2)

AllSelected

1 to 9 of 9 Structures

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1X0P	Download File View File

Structure of a cyanobacterial BLUF protein, Tll0078

Kita, A., Okajima, K., Morimoto, Y., Ikeuchi, M., Miki, K.

(2005) J Mol Biol 349: 1-9

Released	2005-06-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	hypothetical protein Tll0078 (protein)
Unique Ligands	FAD

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2KND	Download File View File

Psb27 structure from Synechocystis

Cormann, K.U., Nowaczyk, M.M., Bangert, J.-A., Ikeuchi, M., Roegner, M., Stoll, R.

(2009) Biochemistry 48: 8768-8770

Released	2009-09-01
Method	SOLUTION NMR
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Photosystem II 11 kDa protein (protein)

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3VV4	Download File View File

Crystal structure of cyanobacteriochrome TePixJ GAF domain

Ishizuka, T., Narikawa, R., Muraki, N., Shiba, T., Kurisu, G., Ikeuchi, M.

(2013) Proc Natl Acad Sci U S A 110: 918-923

Released	2013-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Methyl-accepting chemotaxis protein (protein)
Unique Ligands	PVG, SO4

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3W2Z	Download File View File

Crystal structure of the cyanobacterial protein

Narikawa, R., Muraki, N., Shiba, T., Kurisu, G., Ikeuchi, M.

(2013) Proc Natl Acad Sci U S A 110: 918-923

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Methyl-accepting chemotaxis protein (protein)
Unique Ligands	CYC, IOD

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5H2F	Download File View File

Crystal structure of the PsbM-deletion mutant of photosystem II

Uto, S., Kawakami, K., Umena, Y., Iwai, M., Ikeuchi, M., Shen, J.R., Kamiya, N.

(2017) Faraday Discuss 198: 107-120

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL

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5ZOH	Download File View File

Crystal structure of a far-red light-absorbing form of AnPixJg2_BV4 in complex with biliverdin

Miyazaki, T., Fushimi, K., Narikawa, R.

(2019) Proc Natl Acad Sci U S A 116: 8301-8309

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Methyl-accepting chemotaxis protein (protein)
Unique Ligands	BLA, GOL

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6JEO	Download File View File

Structure of PSI tetramer from Anabaena

Kato, K., Nagao, R., Shen, J.R., Miyazaki, N., Akita, F.

(2019) Nat Commun 10: 4929-4929

Released	2019-11-13
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Nostoc sp. PCC 7120 = FACHB-418
Macromolecule	Unique protein chains: 12
Unique Ligands	BCR, CL0, CLA, LHG, LMG, PQN, SF4

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7YQ2	Download File View File

Crystal structure of photosystem II expressing psbA2 gene only

Nakajima, Y., Suga, M., Shen, J.R.

(2022) J Biol Chem 298: 102668-102668

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL

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7YQ7	Download File View File

Crystal structure of photosystem II expressing psbA3 gene only

Nakajima, Y., Suga, M., Shen, J.R.

(2022) J Biol Chem 298: 102668-102668

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL

1 to 9 of 9 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

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