RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Iwai, M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Penicillium chrysogenum (4)
	Synechocystis sp. PCC 6803 (3)
	Thermosynechococcus vestitus BP-1 (3)
	Mus musculus (1)
	Physcomitrium patens (1)
	Synechocystis sp. PCC 6803 substr. Kazusa (1)

Taxonomy

	Bacteria (7)
	Eukaryota (6)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (5)
	3.0 - 3.5 (2)
	> 4.5 (1)

Release Date

	2000 - 2004 (1)
	2015 - 2019 (6)
	2020 - 2024 (6)

Enzyme Classification Name

Oxidoreductases (3)

Membrane Protein Annotation

	PDBTM (3)
	mpstruc (2)
	OPM (1)
	MemProtMD (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (6)

SCOP Classification

	Membrane and cell surface proteins and peptides (1)
	All alpha proteins (2)
	All beta proteins (1)

AllSelected

1 to 13 of 13 Structures

Page 1 of 1

Sort by

Explore in 3D

1N4K	Download File View File

Crystal structure of the inositol 1,4,5-trisphosphate receptor binding core in complex with IP3

Bosanac, I., Alattia, J.R., Mal, T.K., Chan, J., Talarico, S., Tong, F.K., Tong, K.I., Yoshikawa, F., Furuichi, T., Iwai, M., Michikawa, T., Mikoshiba, K., Ikura, M.

(2002) Nature 420: 696-700

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	Inositol 1,4,5-trisphosphate receptor type 1 (protein)
Unique Ligands	I3P

Explore in 3D

5H2F	Download File View File

Crystal structure of the PsbM-deletion mutant of photosystem II

Uto, S., Kawakami, K., Umena, Y., Iwai, M., Ikeuchi, M., Shen, J.R., Kamiya, N.

(2017) Faraday Discuss 198: 107-120

Released	2017-03-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL

Explore in 3D

5XQ3	Download File View File

Crystal structure of a PL 26 exo-rhamnogalacturonan lyase from Penicillium chrysogenum

Kunishige, Y., Iwai, M., Tada, T., Nishimura, S., Sakamoto, T.

(2018) FEBS Lett 592: 1378-1388

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Penicillium chrysogenum
Macromolecule	Pcrglx protein (protein)
Unique Ligands	CA

Explore in 3D

5XQG	Download File View File

Crystal structure of a PL 26 exo-rhamnogalacturonan lyase from Penicillium chrysogenum complexed with unsaturated galacturonosyl rhamnose

Kunishige, Y., Iwai, M., Tada, T., Nishimura, S., Sakamoto, T.

(2018) FEBS Lett 592: 1378-1388

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Penicillium chrysogenum
Macromolecule	Pcrglx protein (protein)
Unique Ligands	CA
Unique branched monosaccharides	GAD, RAM

Explore in 3D

5XQJ	Download File View File

Crystal structure of a PL 26 exo-rhamnogalacturonan lyase from Penicillium chrysogenum complexed with unsaturated galacturonosyl rhamnose substituted with galactose

Kunishige, Y., Iwai, M., Tada, T., Nishimura, S., Sakamoto, T.

(2018) FEBS Lett 592: 1378-1388

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Penicillium chrysogenum
Macromolecule	Pcrglx protein (protein)
Unique Ligands	CA
Unique branched monosaccharides	GAD, GAL, RAM

Explore in 3D

5XQO	Download File View File

Crystal structure of a PL 26 exo-rhamnogalacturonan lyase from Penicillium chrysogenum complexed with tetrameric substrate

Kunishige, Y., Iwai, M., Tada, T., Nishimura, S., Sakamoto, T.

(2018) FEBS Lett 592: 1378-1388

Released	2018-03-21
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Penicillium chrysogenum
Macromolecule	Pcrglx protein (protein)
Unique Ligands	CA
Unique branched monosaccharides	ADA, GAD, RAM

Explore in 3D

6MEM	Download File View File

A unique supramolecular organization of photosystem I in the moss Physcomitrella patens

Iwai, M., Grob, P.

(2018) Nat Plants 4: 904-909

Released	2018-11-21
Method	ELECTRON MICROSCOPY 11.6 Å
Organisms	Physcomitrium patens
Macromolecule	Unique protein chains: 24

Explore in 3D

7YQ2	Download File View File

Crystal structure of photosystem II expressing psbA2 gene only

Nakajima, Y., Suga, M., Shen, J.R.

(2022) J Biological Chem 298: 102668-102668

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL

Explore in 3D

7YQ7	Download File View File

Crystal structure of photosystem II expressing psbA3 gene only

Nakajima, Y., Suga, M., Shen, J.R.

(2022) J Biological Chem 298: 102668-102668

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 20
Unique Ligands	BCR, BCT, CA, CL, CLA, DGD, DMS, FE2, GOL, HEC, HEM, HTG, LHG, LMG, LMT, MG, OEX, PHO, PL9, RRX, SQD, UNL

Explore in 3D

8FM6	Download File View File

Dri1 hemoprotein variant H21A with a zinc-mirror heme site

Yee, E.F., Blaby-Haas, C.

(2024) Nat Commun 15: 3167-3167

Released	2024-04-24
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Ssr1698 protein (protein)
Unique Ligands	HEB

Explore in 3D

8GBK	Download File View File

Dri1 hemoprotein variant H79A-R90A with a zinc-mirror heme site

Yee, E.F., Blaby-Haas, C.

(2024) Nat Commun 15: 3167-3167

Released	2024-04-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Synechocystis sp. PCC 6803 substr. Kazusa
Macromolecule	Ssr1698 protein (protein)
Unique Ligands	HEB

Explore in 3D

8GDW	Download File View File

Crystal structure of Domain Related to Iron (DRI) from cyanobacteria

Kumaran, D., Grosjean, N., Blaby, E.C.

(2024) Nat Commun 15: 3167-3167

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Ssr1698 protein (protein)
Unique Ligands	ZN

Explore in 3D

8GF4	Download File View File

Crystal structure of Domain Related to Iron (DRI) in complex with heme

Kumaran, D., Blaby, E.C.

(2024) Nat Commun 15: 3167-3167

Released	2024-03-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Synechocystis sp. PCC 6803
Macromolecule	Ssr1698 protein (protein)
Unique Ligands	HEM, ZN

1 to 13 of 13 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification