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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Jackson, S.E."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

synthetic construct (30)

Taxonomy

other sequences (30)

Experimental Method

	X-RAY DIFFRACTION (21)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

Protein (30)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)
	3.0 - 3.5 (4)
	3.5 - 4.0 (4)
	4.0 - 4.5 (3)
	> 4.5 (3)

Release Date

2020 - 2024 (30)

Symmetry Type

	Cyclic (17)
	Asymmetric (8)
	Octahedral (2)
	Dihedral (1)
	Helical (1)
	Tetrahedral (1)

AllSelected

1 to 25 of 30 Structures

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6WI5 \| pdb_00006wi5	Download File View File

De novo designed protein Foldit4

Bera, A.K., Koepnick, B., Boykov, A., Baker, D.

(2020) Science 368: 78-84

Released	2020-04-22
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	synthetic construct
Macromolecule	De novo designed protein Foldit4 (protein)

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7SQ3 \| pdb_00007sq3	Download File View File

Designed trefoil knot protein, variant 1

Takushi, B., Doyle, L., Stoddard, B.L., Bradley, P.

(2023) Nat Commun 14: 6746-6746

Released	2022-06-29
Method	X-RAY DIFFRACTION 2.453 Å
Organisms	synthetic construct
Macromolecule	Designed trefoil knot protein, variant 1 (protein)
Unique Ligands	CL, NA

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7SQ4 \| pdb_00007sq4	Download File View File

Designed trefoil knot protein, variant 2

Takushi, B., Doyle, L., Stoddard, B.L., Bradley, P.

(2023) Nat Commun 14: 6746-6746

Released	2022-06-29
Method	X-RAY DIFFRACTION 1.493 Å
Organisms	synthetic construct
Macromolecule	Designed trefoil knot protein, variant 2 (protein)
Unique Ligands	MPD, NA

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7SQ5 \| pdb_00007sq5	Download File View File

Designed trefoil knot protein, variant 3

Takushi, B., Doyle, L., Stoddard, B.L., Bradley, P.

(2023) Nat Commun 14: 6746-6746

Released	2022-11-09
Method	X-RAY DIFFRACTION 2.205 Å
Organisms	synthetic construct
Macromolecule	Designed trefoil knot protein, variant 3 (protein)
Unique Ligands	NA

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8D03 \| pdb_00008d03	Download File View File

Hallucinated C2 protein assembly HALC2_068

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	synthetic construct
Macromolecule	HALC2_068 (protein)

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8D04 \| pdb_00008d04	Download File View File

Hallucinated C2 protein assembly HALC2_062

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	synthetic construct
Macromolecule	HALC2_062 (protein)

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8D05 \| pdb_00008d05	Download File View File

Hallucinated C2 protein assembly HALC2_065

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	synthetic construct
Macromolecule	HALC2_065 (protein)

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8D06 \| pdb_00008d06	Download File View File

Hallucinated C3 protein assembly HALC3_104

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	synthetic construct
Macromolecule	HALC3_104 (protein)

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8D07 \| pdb_00008d07	Download File View File

Hallucinated C3 protein assembly HALC3_109

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	synthetic construct
Macromolecule	HALC3_109 (protein)

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8D08 \| pdb_00008d08	Download File View File

Hallucinated C4 protein assembly HALC4_135

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	synthetic construct
Macromolecule	HALC4_135 (protein)

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8D09 \| pdb_00008d09	Download File View File

Hallucinated C4 protein assembly HALC4_136

Ragotte, R.J., Bera, A.K., Wicky, B.I.M., Milles, L.F., Baker, D.

(2022) Science 378: 56-61

Released	2022-09-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	synthetic construct
Macromolecule	HALC4_136 (protein)

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8EOV \| pdb_00008eov	Download File View File

Precisely patterned nanofibers made from extendable protein multiplexes

Bera, A.K., Bethel, N.P.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-16
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	synthetic construct
Macromolecule	C2HR1_4r (protein)
Unique Ligands	PO4

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8EOX \| pdb_00008eox	Download File View File

Precisely patterned nanofibers made from extendable protein multiplexes

Bera, A.K., Bethel, N.P.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-16
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	synthetic construct
Macromolecule	C4HR1_4r (protein)

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8EOZ \| pdb_00008eoz	Download File View File

Precisely patterned nanofibers made from extendable protein multiplexes

Bera, A.K., Bethel, N.P., Kang, A.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	synthetic construct
Macromolecule	C3HR3_4r (protein)

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8ERW \| pdb_00008erw	Download File View File

Precisely patterned nanofibers made from extendable protein multiplexes

Bick, M.J., Parmeggiani, F., Bethel, N.P., Sankaran, B., Baker, D.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-23
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	synthetic construct
Macromolecule	C2HR4_8r (protein)

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8ETQ \| pdb_00008etq	Download File View File

Designed pentafoil knot protein folded into a trefoil knot

Doyle, L.A., Kibler, R.D., Bradley, P., Stoddard, B.L.

(2023) Nat Commun 14: 6746-6746

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	synthetic construct
Macromolecule	k-cTRP5 (protein)

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8FLX \| pdb_00008flx	Download File View File

De novo designed homotrimer; the fusion product of BGL17 and DHR59

Kibler, R.D., Kennedy, M.A., Stoddard, B.L., Lee, S.

(2024) Nature

Released	2023-06-28
Method	X-RAY DIFFRACTION 4.5 Å
Organisms	synthetic construct
Macromolecule	LK031 (protein)

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8G8I \| pdb_00008g8i	Download File View File

C3HR3_9r_shift4: Extendable repeat protein fiber

Bethel, N.P., Borst, A.J.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.92 Å
Organisms	synthetic construct
Macromolecule	C3HR3_9r_shift4 (protein)

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8G9J \| pdb_00008g9j	Download File View File

Geometrically programmable nanomaterial construction using regularized protein building blocks

Huddy, T., Bera, A.K., Baker, D.

(2024) Nature 627: 898-904

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	synthetic construct
Macromolecule	THR1 (protein)

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8G9K \| pdb_00008g9k	Download File View File

Geometrically programmable nanomaterial construction using regularized protein building blocks

Bera, A.K., Huddy, T., Baker, D., Kang, A.

(2024) Nature 627: 898-904

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	synthetic construct
Macromolecule	THR2 (protein)

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8GA6 \| pdb_00008ga6	Download File View File

Geometrically programmable nanomaterial construction using regularized protein building blocks

Huddy, T., Bera, A.K., Baker, D., Kang, A.

(2024) Nature 627: 898-904

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	synthetic construct
Macromolecule	THR6 (protein)

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8GA7 \| pdb_00008ga7	Download File View File

Geometrically programmable nanomaterial construction using regularized protein building blocks

Huddy, T., Bera, A.K., Baker, D., Kang, A.

(2024) Nature 627: 898-904

Released	2024-03-13
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	synthetic construct
Macromolecule	THR5 (protein)

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8GA9 \| pdb_00008ga9	Download File View File

C4HR1_4r: Extendable repeat protein tetramer

Bethel, N.P., Borst, A.J.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.71 Å
Organisms	synthetic construct
Macromolecule	C4HR1_4r (protein)

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8GAA \| pdb_00008gaa	Download File View File

C6HR1_4r: Extendable repeat protein hexamer

Bethel, N.P., Borst, A.J., Baker, D.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-30
Method	ELECTRON MICROSCOPY 4.24 Å
Organisms	synthetic construct
Macromolecule	C6HR1_4r (protein)

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8GAQ \| pdb_00008gaq	Download File View File

C5HR2_4r: Extendable repeat protein pentamer

Bethel, N.P., Borst, A.J.

(2023) Nat Chem 15: 1664-1671

Released	2023-08-30
Method	ELECTRON MICROSCOPY 3.73 Å
Organisms	synthetic construct
Macromolecule	C5HR2_4r (protein)

1 to 25 of 30 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

6WI5 | pdb_00006wi5

7SQ3 | pdb_00007sq3

7SQ4 | pdb_00007sq4

7SQ5 | pdb_00007sq5

8D03 | pdb_00008d03

8D04 | pdb_00008d04

8D05 | pdb_00008d05

8D06 | pdb_00008d06

8D07 | pdb_00008d07

8D08 | pdb_00008d08

8D09 | pdb_00008d09

8EOV | pdb_00008eov

8EOX | pdb_00008eox

8EOZ | pdb_00008eoz

8ERW | pdb_00008erw

8ETQ | pdb_00008etq

8FLX | pdb_00008flx

8G8I | pdb_00008g8i

8G9J | pdb_00008g9j

8G9K | pdb_00008g9k

8GA6 | pdb_00008ga6

8GA7 | pdb_00008ga7

8GA9 | pdb_00008ga9

8GAA | pdb_00008gaa

8GAQ | pdb_00008gaq