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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kudolo, M."

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Search Summary

This query matches 27 Structures.

Refinements

Structure Determination Methodology

experimental (27)

Scientific Name of Source Organism

	Homo sapiens (22)
	Severe acute respiratory syndrome coronavirus 2 (4)
	Arabidopsis thaliana (3)
	Drosophila melanogaster (1)
	Mus musculus (1)

Taxonomy

	Eukaryota (27)
	Riboviria (4)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (24)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

	Protein (27)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	2.5 - 3.0 (7)
	3.0 - 3.5 (9)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (9)
	2020 - 2024 (9)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (1)
	Ligases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (3)
	PDBTM (3)
	mpstruc (3)

Symmetry Type

	Asymmetric (17)
	Cyclic (8)
	Dihedral (1)
	Octahedral (1)

SCOP Classification

	All beta proteins (5)
	Artifacts (4)
	Alpha and beta proteins (a+b) (3)
	All alpha proteins (1)

AllSelected

1 to 25 of 27 Structures

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4FI9 \| pdb_00004fi9	Download File View File

Structure of human SUN-KASH complex

Wang, W.J., Shi, Z.B.

(2012) Cell Res 22: 1440-1452

Released	2012-07-18
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Nesprin-2 (protein) SUN domain-containing protein 2 (protein)

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4FZA \| pdb_00004fza	Download File View File

Crystal structure of MST4-MO25 complex

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	GOL

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4FZD \| pdb_00004fzd	Download File View File

Crystal structure of MST4-MO25 complex with WSF motif

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Homo sapiens
Macromolecule	C-terminal peptide from Serine/threonine-protein kinase MST4 (protein) Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	GOL

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4FZF \| pdb_00004fzf	Download File View File

Crystal structure of MST4-MO25 complex with DKI

Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 449-461

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.64 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase MST4 (protein)
Unique Ligands	DKI

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4GEH \| pdb_00004geh	Download File View File

Crystal structure of MST4 dimerization domain complex with PDCD10

Zhang, M., Shi, Z.B., Zhou, Z.C.

(2013) Structure 21: 680-688

Released	2013-04-17
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Programmed cell death protein 10 (protein) Serine/threonine-protein kinase MST4 (protein)

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4LN0 \| pdb_00004ln0	Download File View File

Crystal structure of the VGLL4-TEAD4 complex

Wang, H., Shi, Z., Zhou, Z.

(2014) Cancer Cell 25: 166-180

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.896 Å
Organisms	Mus musculus
Macromolecule	Transcription cofactor vestigial-like protein 4 (protein) Transcriptional enhancer factor TEF-3 (protein)
Unique Ligands	GOL, PEG

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4N6J \| pdb_00004n6j	Download File View File

Crystal structure of human Striatin-3 coiled coil domain

Chen, C., Shi, Z., Zhou, Z.

(2014) J Biological Chem 289: 9651-9661

Released	2014-02-26
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Striatin-3 (protein)

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4NZW \| pdb_00004nzw	Download File View File

Crystal Structure of STK25-MO25 Complex

Feng, M., Hao, Q., Zhou, Z.C.

(2014) J Struct Biol 186: 224-233

Released	2014-12-03
Method	X-RAY DIFFRACTION 3.583 Å
Organisms	Homo sapiens
Macromolecule	Calcium-binding protein 39 (protein) Serine/threonine-protein kinase 25 (protein)
Unique Ligands	J60

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4O27 \| pdb_00004o27	Download File View File

Crystal structure of MST3-MO25 complex with WIF motif

Hao, Q., Feng, M., Zhou, Z.C.

(2014) J Struct Biol 186: 224-233

Released	2014-12-03
Method	X-RAY DIFFRACTION 3.185 Å
Organisms	Homo sapiens
Macromolecule	5-mer peptide from serine/threonine-protein kinase 24 (protein) Calcium-binding protein 39 (protein) Serine/threonine-protein kinase 24 (protein)
Unique Ligands	ADP, MN

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4RV0 \| pdb_00004rv0	Download File View File

Crystal structure of TN complex

Hao, Q., Jiao, S., Shi, Z.B., Zhou, Z.C.

To be published

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.998 Å
Organisms	Drosophila melanogaster
Macromolecule	Nuclear protein localization protein 4 homolog (protein) Transitional endoplasmic reticulum ATPase TER94 (protein)
Unique Ligands	SO4

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4Z8M \| pdb_00004z8m	Download File View File

Crystal structure of the MAVS-TRAF6 complex

Shi, Z.B., Zhou, Z.

(2015) J Biological Chem 290: 26811-26820

Released	2015-09-23
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Peptide from Mitochondrial antiviral-signaling protein (protein) TNF receptor-associated factor 6 (protein)

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5GZB \| pdb_00005gzb	Download File View File

Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA

He, F., Shi, Z.B., Zhou, Z.C.

(2017) Oncogene 36: 4362-4369

Released	2017-04-19
Method	X-RAY DIFFRACTION 2.704 Å
Organisms	Homo sapiens
Macromolecule	Transcriptional enhancer factor TEF-3 (protein) DNA (5'-D(GPAPGPAPGPGPAPAPTPGPCPAPA)-3') (nucleic acid) DNA (5'-D(TPTPGPCPAPTPTPCPCPTPCPTPC)-3') (nucleic acid)
Unique Ligands	GOL, PO4

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5YF4 \| pdb_00005yf4	Download File View File

A kinase complex MST4-MOB4

Chen, M., Zhou, Z.C.

(2018) J Biological Chem 293: 14455-14469

Released	2018-08-15
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Homo sapiens
Macromolecule	MOB-like protein phocein (protein) Peptide from Serine/threonine-protein kinase 26 (protein)
Unique Ligands	ZN

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6AKK \| pdb_00006akk	Download File View File

Crystal structure of the second Coiled-coil domain of SIKE1

Zhou, L., Chen, M., Zhou, Z.C.

(2019) Cell Discov 5: 3-3

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Suppressor of IKBKE 1 (protein)
Unique Ligands	GOL

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6AKL \| pdb_00006akl	Download File View File

Crystal structure of Striatin3 in complex with SIKE1 Coiled-coil domain

Zhou, L., Chen, M., Zhou, Z.C.

(2019) Cell Discov 5: 3-3

Released	2019-01-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Striatin-3 (protein) Suppressor of IKBKE 1 (protein)

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6AKM \| pdb_00006akm	Download File View File

Crystal structure of SLMAP-SIKE1 complex

Ma, J., Chen, M., Zhou, Z.C.

(2019) Cell Discov 5: 3-3

Released	2019-01-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Sarcolemmal membrane-associated protein (protein) Suppressor of IKBKE 1 (protein)
Unique Ligands	GOL

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6IUR \| pdb_00006iur	Download File View File

A phosphatase complex STRN3-PP2Aa

Tang, Y., Zhou, Z.C.

(2020) Cancer Cell 38: 115-128.e9

Released	2019-12-04
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Homo sapiens
Macromolecule	PP2A scaffolding subunit (protein) Striatin-3 (protein)
Unique Ligands	TME

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6JJP \| pdb_00006jjp	Download File View File

Crystal structure of Fab of a PD-1 monoclonal antibody MW11-h317 in complex with PD-1

Wang, M., Wang, J., Wang, R., Jiao, S., Wang, S., Zhang, J., Zhang, M.

(2019) Commun Biol 2: 392-392

Released	2019-10-30
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Heavy chain of MW11-h317 (protein) Programmed cell death protein 1 (protein) light chain of MW11-h317 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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7DJZ \| pdb_00007djz	Download File View File

Crystal structure of SARS-CoV-2 Spike RBD in complex with MW01 Fab

Wang, J., Jiao, S., Wang, R., Zhang, J., Zhang, M., Wang, M.

(2022) Commun Biol 5: 262-262

Released	2021-06-09
Method	X-RAY DIFFRACTION 2.397 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	MW01 heavy chain (protein) MW01 light chain (protein) Spike protein S1 (protein)
Unique Ligands	CIT, NAG

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7DK0 \| pdb_00007dk0	Download File View File

Crystal structure of SARS-CoV-2 Spike RBD in complex with MW05 Fab

Wang, J., Jiao, S., Wang, R., Zhang, J., Zhang, M., Wang, M.

(2022) Commun Biol 5: 262-262

Released	2021-06-09
Method	X-RAY DIFFRACTION 3.199 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	MW05 heavy chain (protein) MW05 light chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7DK2 \| pdb_00007dk2	Download File View File

Crystal structure of SARS-CoV-2 Spike RBD in complex with MW07 Fab

Wang, J., Jiao, S., Wang, R., Zhang, J., Zhang, M., Wang, M., Chen, S.

To be published

Released	2021-12-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	MW07 heavy chain (protein) MW07 light chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7DPM \| pdb_00007dpm	Download File View File

Crystal structure of SARS-CoV-2 Spike RBD in complex with MW06 Fab

Wang, J., Jiao, S., Wang, R., Zhang, J., Zhang, M., Wang, M.

(2021) MAbs 13: 1953683-1953683

Released	2021-02-17
Method	X-RAY DIFFRACTION 3.304 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) heavy chain of MW06 (protein) light chain of MW06 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	FUC, NAG

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7WKS \| pdb_00007wks	Download File View File

Apo state of AtPIN3

Su, N.

(2022) Nature 609: 616-621

Released	2022-08-10
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin efflux carrier component 3 (protein)

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7WKW \| pdb_00007wkw	Download File View File

NPA bound state of AtPIN3

Su, N.

(2022) Nature 609: 616-621

Released	2022-08-10
Method	ELECTRON MICROSCOPY 2.62 Å
Organisms	Arabidopsis thaliana
Macromolecule	Auxin efflux carrier component 3 (protein)
Unique Ligands	E7O

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7XJF \| pdb_00007xjf	Download File View File

Crystal structure of 6MW3211 Fab in complex with CD47

Wang, J., Wang, R., Jiao, S., Wang, S., Zhang, J., Zhang, M., Wang, M.

(2023) Theranostics 13: 148-160

Released	2023-05-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Heavy chain of 6MW3211 Fab (protein) Leukocyte surface antigen CD47 (protein) Light chain of 6MW3211 Fab (protein)
Unique Ligands	CL, NAG
Unique branched monosaccharides	FUC, NAG

1 to 25 of 27 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4FI9 | pdb_00004fi9

4FZA | pdb_00004fza

4FZD | pdb_00004fzd

4FZF | pdb_00004fzf

4GEH | pdb_00004geh

4LN0 | pdb_00004ln0

4N6J | pdb_00004n6j

4NZW | pdb_00004nzw

4O27 | pdb_00004o27

4RV0 | pdb_00004rv0

4Z8M | pdb_00004z8m

5GZB | pdb_00005gzb

5YF4 | pdb_00005yf4

6AKK | pdb_00006akk

6AKL | pdb_00006akl

6AKM | pdb_00006akm

6IUR | pdb_00006iur

6JJP | pdb_00006jjp

7DJZ | pdb_00007djz

7DK0 | pdb_00007dk0

7DK2 | pdb_00007dk2

7DPM | pdb_00007dpm

7WKS | pdb_00007wks

7WKW | pdb_00007wkw

7XJF | pdb_00007xjf