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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kumarapperuma, S."

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Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

	Homo sapiens (26)
	Bacillus anthracis (14)
	Mycobacterium tuberculosis variant bovis AF2122/97 (3)
	Mycobacterium tuberculosis H37Rv (2)

Taxonomy

	Eukaryota (26)
	Bacteria (19)

Experimental Method

X-RAY DIFFRACTION (45)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (15)
	2.0 - 2.5 (12)
	2.5 - 3.0 (5)

Release Date

	2010 - 2014 (9)
	2015 - 2019 (36)

Enzyme Classification Name

	Hydrolases (40)
	Transferases (5)

Symmetry Type

	Cyclic (31)
	Asymmetric (14)

SCOP Classification

	Alpha and beta proteins (a+b) (40)
	Alpha and beta proteins (a/b) (5)
	Artifacts (4)

AllSelected

1 to 25 of 45 Structures

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4INC \| pdb_00004inc	Download File View File

Human Histidine Triad Nucleotide Binding Protein 2

Maize, K.M., Wagner, C.R., Finzel, B.C.

(2013) FEBS J 280: 3389-3398

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.19 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 2, mitochondrial (protein)
Unique Ligands	CL

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4INI \| pdb_00004ini	Download File View File

Human Histidine Triad Nucleotide Binding Protein 2 with Bound AMP

Maize, K.M., Wagner, C.R., Finzel, B.C.

(2013) FEBS J 280: 3389-3398

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 2, mitochondrial (protein)
Unique Ligands	1PE, AMP, PEG, PG5

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4PKQ \| pdb_00004pkq	Download File View File

Anthrax toxin lethal factor with bound zinc

Maize, K.M., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	EDO, PGE, ZN

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4PKR \| pdb_00004pkr	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor 10

Maize, K.M., De la Mora, T., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	2ZL, CL, GOL, ZN

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4PKS \| pdb_00004pks	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor 11

Maize, K.M., De la Mora, T., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	30H, EDO, GOL, ZN

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4PKT \| pdb_00004pkt	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor 13

Maize, K.M., De la Mora, T., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	30O, ZN

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4PKU \| pdb_00004pku	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor 15

Maize, K.M., De la Mora, T., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	30P, ZN

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4PKV \| pdb_00004pkv	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor 16

Maize, K.M., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	30R, ZN

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4PKW \| pdb_00004pkw	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor GM6001

Maize, K.M., De la Mora, T., Finzel, B.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2813-2822

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	EDO, GM6, GOL, ZN

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4WF6 \| pdb_00004wf6	Download File View File

Anthrax toxin lethal factor with bound small molecule inhibitor MK-31

Maize, K.M., De la Mora-Rey, T., Finzel, B.C.

(2015) J Med Chem 58: 8723-8733

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.6521 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	407, EDO, ZN

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4XJO \| pdb_00004xjo	Download File View File

Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with an inhibitor optimized from HTS lead

Finzel, B.C., Dai, R.

(2017) J Med Chem 60: 5507-5520

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	41O, CL, EDO, PLP, SO4

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4XJP \| pdb_00004xjp	Download File View File

Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with an inhibitor optimized from HTS lead

Finzel, B.C., Dai, R.

(2017) J Med Chem 60: 5507-5520

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	41N, EDO, PEG, PLP

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4XM6 \| pdb_00004xm6	Download File View File

Anthrax toxin lethal factor with ligand-induced binding pocket

Maize, K.M., De la Mora-Rey, T., Finzel, B.C.

(2015) FEBS Lett 589: 3836-3841

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.352 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	41R, EDO, ZN

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4XM7 \| pdb_00004xm7	Download File View File

Anthrax toxin lethal factor with ligand-induced binding pocket

Maize, K.M., Finzel, B.C.

(2015) FEBS Lett 589: 3836-3841

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	41S, EDO, ZN

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4XM8 \| pdb_00004xm8	Download File View File

Anthrax toxin lethal factor with ligand-induced binding pocket

Maize, K.M., Finzel, B.C.

(2015) FEBS Lett 589: 3836-3841

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	41T, ZN

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5D1S \| pdb_00005d1s	Download File View File

Anthrax toxin lethal factor with hydroxamic acid inhibitor

Maize, K.M., Finzel, B.C.

(2015) J Med Chem 58: 8723-8733

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	56Q, ZN

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5D1T \| pdb_00005d1t	Download File View File

Anthrax toxin lethal factor with hydroxamic acid inhibitor

Maize, K.M., Finzel, B.C.

(2015) J Med Chem 58: 8723-8733

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	56R, ZN

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5D1U \| pdb_00005d1u	Download File View File

Anthrax toxin lethal factor with hydroxamic acid inhibitor

Maize, K.M., Finzel, B.C.

(2015) J Med Chem 58: 8723-8733

Released	2015-11-11
Method	X-RAY DIFFRACTION 2.8503 Å
Organisms	Bacillus anthracis
Macromolecule	Lethal factor (protein)
Unique Ligands	56P, ZN

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5EMT \| pdb_00005emt	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1)-copper complex

Maize, K.M., Nix, J.C., Finzel, B.C.

(2017) Biochem Biophys Res Commun 491: 760-766

Released	2016-11-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	CU

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5I2E \| pdb_00005i2e	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (Hint1) with Bound Sulfamate Inhibitor 3a:3-(5-O-{[3-(1H-indol-3-yl)propanoyl]sulfamoyl}-beta-D-ribofuranosyl)-3H-imidazo[2,1-i]purine

Strom, A.M., Finzel, B.C., Wagner, C.R.

(2016) ACS Med Chem Lett 7: 780-784

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	67D, GOL

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5I2F \| pdb_00005i2f	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) with bound sulfamide inhibitor Bio-AMS

Maize, K.M., Finzel, B.C.

(2016) ACS Med Chem Lett 7: 780-784

Released	2016-06-22
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	BS5, EDO

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5IPB \| pdb_00005ipb	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) H112N mutant

Maize, K.M., Finzel, B.C.

(2017) Biochemistry 56: 3559-3570

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	CL

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5IPC \| pdb_00005ipc	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) H112N mutant nucleoside thiophosphoramidate substrate complex

Maize, K.M., Finzel, B.C.

(2017) Biochemistry 56: 3559-3570

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	6CE, CL, EDO

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5IPD \| pdb_00005ipd	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) nucleoside thiophosphoramidate covalent intermediate complex

Maize, K.M., Finzel, B.C.

(2017) Biochemistry 56: 3559-3570

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	6CG

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5IPE \| pdb_00005ipe	Download File View File

Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) nucleoside thiophosphoramidate catalytic product complex

Maize, K.M., Finzel, B.C.

(2017) Biochemistry 56: 3559-3570

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Homo sapiens
Macromolecule	Histidine triad nucleotide-binding protein 1 (protein)
Unique Ligands	6CG, CL, EDO

1 to 25 of 45 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4INC | pdb_00004inc

4INI | pdb_00004ini

4PKQ | pdb_00004pkq

4PKR | pdb_00004pkr

4PKS | pdb_00004pks

4PKT | pdb_00004pkt

4PKU | pdb_00004pku

4PKV | pdb_00004pkv

4PKW | pdb_00004pkw

4WF6 | pdb_00004wf6

4XJO | pdb_00004xjo

4XJP | pdb_00004xjp

4XM6 | pdb_00004xm6

4XM7 | pdb_00004xm7

4XM8 | pdb_00004xm8

5D1S | pdb_00005d1s

5D1T | pdb_00005d1t

5D1U | pdb_00005d1u

5EMT | pdb_00005emt

5I2E | pdb_00005i2e

5I2F | pdb_00005i2f

5IPB | pdb_00005ipb

5IPC | pdb_00005ipc

5IPD | pdb_00005ipd

5IPE | pdb_00005ipe