RCSB PDB: Search

1AMK \| pdb_00001amk	Download File View File

LEISHMANIA MEXICANA TRIOSE PHOSPHATE ISOMERASE

Williams, J.C., Wierenga, R.

(1999) Protein Eng 12: 243-250

Released	1997-12-17
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSE PHOSPHATE ISOMERASE (protein)
Unique Ligands	PGA

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1DKW \| pdb_00001dkw	Download File View File

CRYSTAL STRUCTURE OF TRIOSE-PHOSPHATE ISOMERASE WITH MODIFIED SUBSTRATE BINDING SITE

Norledge, B.V., Lambeir, A.M., Abagyan, R.A., Rottman, A., Fernandez, A.M., Filimonov, V.V., Peter, M.G., Wierenga, R.K.

(2001) Proteins 42: 383-389

Released	2000-11-03
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	TBU

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1IF2 \| pdb_00001if2	Download File View File

X-RAY STRUCTURE OF LEISHMANIA MEXICANA TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH IPP

Kursula, I., Partanen, S., Lambeir, A.-M., Antonov, D.M., Augustyns, K., Wierenga, R.K.

(2001) Eur J Biochem 268: 5189-5196

Released	2001-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	129

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1IIG \| pdb_00001iig	Download File View File

STRUCTURE OF TRYPANOSOMA BRUCEI BRUCEI TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH 3-PHOSPHONOPROPIONATE

Noble, M.E., Wierenga, R.K., Lambeir, A.M., Opperdoes, F.R., Thunnissen, A.M., Kalk, K.H., Groendijk, H., Hol, W.G.J.

(1991) Proteins 10: 50-69

Released	2001-05-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	3PP

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1IIH \| pdb_00001iih	Download File View File

STRUCTURE OF TRYPANOSOMA BRUCEI BRUCEI TRIOSEPHOSPHATE ISOMERASE COMPLEXED WITH 3-PHOSPHOGLYCERATE

Noble, M.E., Wierenga, R.K., Lambeir, A.M., Opperdoes, F.R., Thunnissen, A.M., Kalk, K.H., Groendijk, H., Hol, W.G.J.

(1991) Proteins 10: 50-69

Released	2001-05-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	3PG

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1QDS \| pdb_00001qds	Download File View File

SUPERSTABLE E65Q MUTANT OF LEISHMANIA MEXICANA TRIOSEPHOSPHATE ISOMERASE (TIM)

Lambeir, A.M., Backmann, J., Ruiz-Sanz, J., Filimonov, V., Nielsen, J.E., Vriend, G., Kursula, I., Norledge, B.V., Wierenga, R.K.

(2000) Eur J Biochem 267: 2516-2524

Released	2000-12-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Leishmania mexicana
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	PGA

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1XIM \| pdb_00001xim	Download File View File

ARGININE RESIDUES AS STABILIZING ELEMENTS IN PROTEINS

Mrabet, N.T., Van Denbroek, A., Van Den Brande, I., Stanssens, P., Laroche, Y., Lambeir, A.-M., Matthyssens, G., Jenkins, J., Chiadmi, M., Vantilbeurgh, H., Rey, F., Janin, J., Quax, W.J., Lasters, I., Demaeyer, M., Wodak, S.J.

(1992) Biochemistry 31: 2239-2253

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	CO, XYL

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1XIN \| pdb_00001xin	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XYL

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2J24 \| pdb_00002j24	Download File View File

The functional role of the conserved active site proline of triosephosphate isomerase

Casteleijn, M.G., Alahuhta, M., Groebel, K., El-Sayed, I., Augustyns, K., Lambeir, A.M., Neubauer, P., Wierenga, R.K.

(2006) Biochemistry 45: 15483

Released	2007-01-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE, GLYCOSOMAL (protein)

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2J27 \| pdb_00002j27	Download File View File

The functional role of the conserved active site proline of triosephosphate isomerase.

Casteleijn, M.G., Alahuhta, M., Groebel, K., El-Sayed, I., Augustyns, K., Lambeir, A.M., Neubauer, P., Wierenga, R.K.

(2006) Biochemistry 45: 15483

Released	2007-01-02
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE GLYCOSOMAL (protein)
Unique Ligands	PGA, SO4

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2XIM \| pdb_00002xim	Download File View File

ARGININE RESIDUES AS STABILIZING ELEMENTS IN PROTEINS

Mrabet, N.T., Van Denbroek, A., Van Den Brande, I., Stanssens, P., Laroche, Y., Lambeir, A.-M., Matthyssens, G., Jenkins, J., Chiadmi, M., Vantilbeurgh, H., Rey, F., Janin, J., Quax, W.J., Lasters, I., Demaeyer, M., Wodak, S.J.

(1992) Biochemistry 31: 2239-2253

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XYL

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2XIN \| pdb_00002xin	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	CO, SOR

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3XIM \| pdb_00003xim	Download File View File

ARGININE RESIDUES AS STABILIZING ELEMENTS IN PROTEINS

Mrabet, N.T., Van Denbroek, A., Van Den Brande, I., Stanssens, P., Laroche, Y., Lambeir, A.-M., Matthyssens, G., Jenkins, J., Chiadmi, M., Vantilbeurgh, H., Rey, F., Janin, J., Quax, W.J., Lasters, I., Demaeyer, M., Wodak, S.J.

(1992) Biochemistry 31: 2239-2253

Released	1993-04-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	CO, SOR

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3XIN \| pdb_00003xin	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)

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4BCB \| pdb_00004bcb	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND P2- substituted N-acyl-prolylpyrrolidine inhibitor

VanDerVeken, P., Fulop, V., Rea, D., Gerard, M., VanElzen, R., Joossens, J., Cheng, J.D., Baekelandt, V., DeMeester, I., Lambeir, A.M., Augustyns, K.

(2012) J Med Chem 55: 9856

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	4I4, GOL, TAM

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4BCC \| pdb_00004bcc	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND P2- substituted N-acyl-prolylpyrrolidine inhibitor

VanDerVeken, P., Fulop, V., Rea, D., Gerard, M., VanElzen, R., Joossens, J., Cheng, J.D., Baekelandt, V., DeMeester, I., Lambeir, A.M., Augustyns, K.

(2012) J Med Chem 55: 9856

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL, JKT, TAM

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4BCD \| pdb_00004bcd	Download File View File

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A NON-COVALENTLY BOUND P2-substituted N-acyl-prolylpyrrolidine inhibitor

VanDerVeken, P., Fulop, V., Rea, D., Gerard, M., VanElzen, R., Joossens, J., Cheng, J.D., Baekelandt, V., DeMeester, I., Lambeir, A.M., Augustyns, K.

(2012) J Med Chem 55: 9856

Released	2013-03-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Sus scrofa
Macromolecule	PROLYL ENDOPEPTIDASE (protein)
Unique Ligands	GOL, TAM, TDV

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4XIM \| pdb_00004xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	CO

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5OLJ \| pdb_00005olj	Download File View File

Crystal structure of Porphyromonas gingivalis dipeptidyl peptidase 4

Fulop, V.

(2017) Eur J Med Chem 139: 482-491

Released	2017-09-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Porphyromonas gingivalis
Macromolecule	Dipeptidyl peptidase IV (protein)
Unique Ligands	GOL

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5XIM \| pdb_00005xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, SOR

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5XIN \| pdb_00005xin	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XLS

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6TIM \| pdb_00006tim	Download File View File

THE ADAPTABILITY OF THE ACTIVE SITE OF TRYPANOSOMAL TRIOSEPHOSPHATE ISOMERASE AS OBSERVED IN THE CRYSTAL STRUCTURES OF THREE DIFFERENT COMPLEXES

Noble, M.E.M., Wierenga, R.K., Hol, W.G.J.

(1991) Proteins 10: 50-69

Released	1992-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Trypanosoma brucei brucei
Macromolecule	TRIOSEPHOSPHATE ISOMERASE (protein)
Unique Ligands	G3P

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7XIM \| pdb_00007xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)

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8XIM \| pdb_00008xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XLS

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9XIM \| pdb_00009xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MN, XLS

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Structure Determination Methodology

Scientific Name of Source Organism

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Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

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Enzyme Classification Name

Symmetry Type

SCOP Classification

1AMK | pdb_00001amk

1DKW | pdb_00001dkw

1IF2 | pdb_00001if2

1IIG | pdb_00001iig

1IIH | pdb_00001iih

1QDS | pdb_00001qds

1XIM | pdb_00001xim

1XIN | pdb_00001xin

2J24 | pdb_00002j24

2J27 | pdb_00002j27

2XIM | pdb_00002xim

2XIN | pdb_00002xin

3XIM | pdb_00003xim

3XIN | pdb_00003xin

4BCB | pdb_00004bcb

4BCC | pdb_00004bcc

4BCD | pdb_00004bcd

4XIM | pdb_00004xim

5OLJ | pdb_00005olj

5XIM | pdb_00005xim

5XIN | pdb_00005xin

6TIM | pdb_00006tim

7XIM | pdb_00007xim

8XIM | pdb_00008xim

9XIM | pdb_00009xim