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232,829 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Palumbo, C.M."

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Search Summary

This query matches 3 Structures.

Refinements

Structure Determination Methodology

experimental (3)

Scientific Name of Source Organism

	Homo sapiens (2)
	Escherichia coli (1)
	Streptococcus pyogenes (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (2)
	Bacteria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (2)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (3)
	RNA (3)
	DNA (1)

Refinement Resolution (Å)

	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (3)

Symmetry Type

Asymmetric (3)

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6D06	Download File View File

Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base

Matthews, M.M., Fisher, A.J., Beal, P.A.

(2019) Cell Chem Biol 26: 269

Released	2019-02-20
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5'-R(CPAPGPAPGPCPCPCPCPCPNPAPGPCPAPUPCPGPCPGPAPGPC)-3') (nucleic acid) RNA (5'-R(GPCPUPCPGPCPGPAPUPGPCPUP(8AZ)PGPAPGPGPGPCPUPCPUPG)-3') (nucleic acid)
Unique Ligands	IHP, ZN

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6VFF	Download File View File

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

Thuy-boun, A.S., Fisher, A.J., Beal, P.A.

(2020) Nucleic Acids Res 48: 7958-7972

Released	2020-07-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Double-stranded RNA-specific editase 1 (protein) RNA (5-R(GPCPUPCPGPCPGPAPUPGPCPUP(8AZ)PGPAPGPGPGPCP UPCPUPGPAPUPAPGPCPUPAPCPG)-3) (nucleic acid) RNA(5-R(CPGPUPAPGPCPUPAPUPCPAPGPAPGPCPCPCPCPCPCPAPGPCPAPUPCPGPCPGPAPGPC)-3) (nucleic acid)
Unique Ligands	IHP, ZN

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6VPC	Download File View File

Structure of the SpCas9 DNA adenine base editor - ABE8e

Knott, G.J., Lapinaite, A., Doudna, J.A.

(2020) Science 369: 566-571

Released	2020-07-29
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli Streptococcus pyogenes synthetic construct
Macromolecule	CRISPR-associated endonuclease Cas9 (protein) t-RNA adenine deaminase A v8e (TadA-8e) (protein) Cas9 (SpCas9) single-guide RNA (sgRNA) (nucleic acid) DNA non-target strand (NTS) (nucleic acid) DNA target strand (TS) (nucleic acid)
Unique Ligands	MG, ZN

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6D06

Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base

6VFF

Dimer of Human Adenosine Deaminase Acting on dsRNA (ADAR2) mutant E488Q bound to dsRNA sequence derived from human GLI1 gene

6VPC

Structure of the SpCas9 DNA adenine base editor - ABE8e