RCSB PDB: Search

1B55 \| pdb_00001b55	Download File View File

PH DOMAIN FROM BRUTON'S TYROSINE KINASE IN COMPLEX WITH INOSITOL 1,3,4,5-TETRAKISPHOSPHATE

Djinovic Carugo, K., Baraldi, E., Hyvoenen, M., Lo Surdo, P., Riley, A.M., Potter, B.V.L., O'Brien, R., Ladbury, J.E., Saraste, M.

(1999) Structure 7: 449-460

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TYROSINE-PROTEIN KINASE BTK (protein)
Unique Ligands	4IP, ZN

Explore in 3D

1BWN \| pdb_00001bwn	Download File View File

PH DOMAIN AND BTK MOTIF FROM BRUTON'S TYROSINE KINASE MUTANT E41K IN COMPLEX WITH INS(1,3,4,5)P4

Djinovic Carugo, K., Baraldi, E., Hyvoenen, M., Lo Surdo, P., Riley, A., Potter, B., Saraste, M.

(1999) Structure 7: 449-460

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	BRUTON'S TYROSINE KINASE (protein)
Unique Ligands	4IP, ZN

Explore in 3D

4A9C \| pdb_00004a9c	Download File View File

Crystal structure of human SHIP2 in complex with biphenyl 2,3',4,5',6- pentakisphosphate

Tresaugues, L., Arrowsmith, C.H., Berglund, H., Bountra, C., Edwards, A.M., Ekblad, T., Graslund, S., Karlberg, T., Mills, S.J., Moche, M., Nyman, T., Persson, C., Potter, B.V.L., Schuler, H., Thorsell, A.G., Weigelt, J., Nordlund, P.

(2012) ACS Chem Biol 7: 822

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATIDYLINOSITOL-3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 2 (protein)
Unique Ligands	B5F

Explore in 3D

4HN2 \| pdb_00004hn2	Download File View File

Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with AMPPNP and a substrate analog 5PA-IP5

Wang, H.

(2012) Chem Commun (Camb) 48: 11292-11294

Released	2012-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	0EJ, ANP, MG

Explore in 3D

4NZM \| pdb_00004nzm	Download File View File

Crystal structure of the catalytic domain of PPIP5K2 in complex with AMPPNP and 5-PA-InsP5

Wang, H., Shears, S.B.

(2014) Chem Biol 21: 689-699

Released	2014-04-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	0EJ, ANP, MG

Explore in 3D

4NZN \| pdb_00004nzn	Download File View File

Crystal structure of the catalytic domain of PPIP5K2 in complex with AMPPNP and 2-O-BN-5-PA-INSP4

Wang, H., Shears, S.B.

(2014) Chem Biol 21: 689-699

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	2OU, ANP, MG

Explore in 3D

4NZO \| pdb_00004nzo	Download File View File

Crystal structure of the catalytic domain of PPIP5K2 in complex with AMPPNP and 2,5-DI-O-BN-INSP4

Wang, H., Shears, S.B.

(2014) Chem Biol 21: 689-699

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	2OV, ANP, MG

Explore in 3D

5BYA \| pdb_00005bya	Download File View File

Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with ADP and 1,5-(PCP)2-IP4

Wang, H., Shears, S.B.

(2015) Chem Commun (Camb) 51: 12605-12608

Released	2015-07-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	4WZ, ACT, ADP, EDO, MG

Explore in 3D

5BYB \| pdb_00005byb	Download File View File

Crystal structure of the catalytic domain of human diphosphoinositol pentakisphosphate kinase 2 (PPIP5K2) in complex with ADP and 1,5-(PA)2-IP4

Wang, H., Shears, S.B.

(2015) Chem Commun (Camb) 51: 12605-12608

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	4WY, ACT, ADP, EDO, MG

Explore in 3D

5ICN \| pdb_00005icn	Download File View File

HDAC1:MTA1 in complex with inositol-6-phosphate and a novel peptide inhibitor based on histone H4

Millard, C.J., Robertson, N.S., Watson, P.J., Jameson, A.G., Schwabe, J.W.R.

(2016) Nat Commun 7: 11262-11262

Released	2016-05-11
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	GLY-ALA-6A0-ARG-HIS (protein) Histone deacetylase 1 (protein) Metastasis-associated protein MTA1 (protein)
Unique Ligands	IHP, K, ZN

Explore in 3D

6FJK \| pdb_00006fjk	Download File View File

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with myo-IP6 and ADP

Whitfield, H.L., Brearley, C.A., Hemmings, A.M.

(2018) J Med Chem 61: 8838-8846

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.025 Å
Organisms	Arabidopsis thaliana
Macromolecule	Inositol-pentakisphosphate 2-kinase (protein)
Unique Ligands	ADP, IHP, MG, TRS, ZN

Explore in 3D

6FL3 \| pdb_00006fl3	Download File View File

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with myo-IP5 and ADP

Whitfield, H.L., Brearley, C.A., Hemmings, A.M.

(2018) J Med Chem 61: 8838-8846

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Arabidopsis thaliana
Macromolecule	Inositol-pentakisphosphate 2-kinase (protein)
Unique Ligands	5MY, ADP, B3P, MG, ZN

Explore in 3D

6FL8 \| pdb_00006fl8	Download File View File

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with purpurogallin and ADP

Whitfield, H.L., Brearley, C.A., Hemmings, A.M.

(2018) J Med Chem 61: 8838-8846

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arabidopsis thaliana
Macromolecule	Inositol-pentakisphosphate 2-kinase (protein)
Unique Ligands	ADP, EDO, MG, TIY, TRS, ZN

Explore in 3D

6GFG \| pdb_00006gfg	Download File View File

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with D-chiro-IP6 and ADP

Whitfield, H.L., Brearley, C.A., Hemmings, A.M.

(2018) J Med Chem 61: 8838-8846

Released	2018-09-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Arabidopsis thaliana
Macromolecule	Inositol-pentakisphosphate 2-kinase (protein)
Unique Ligands	ADP, KGN, MG, ZN

Explore in 3D

6GFH \| pdb_00006gfh	Download File View File

Inositol 1,3,4,5,6-pentakisphosphate 2-kinase from A. thaliana in complex with neo-IP5 and ATP

Whitfield, H.L., Brearley, C.A., Hemmings, A.M.

(2018) J Med Chem 61: 8838-8846

Released	2018-09-12
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Arabidopsis thaliana
Macromolecule	Inositol-pentakisphosphate 2-kinase (protein)
Unique Ligands	ATP, B3P, EDO, K7V, MG, ZN

Explore in 3D

6N5C \| pdb_00006n5c	Download File View File

Crystal structure of the catalytic domain of PPIP5K2 in complex with AMPPNP and 5-PCF2Am-InsP5

Wang, H., Shears, S.B., Riley, A., Potter, B.

(2019) Medchemcomm 10: 1165-1172

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 (protein)
Unique Ligands	ACT, ANP, EDO, KDJ, MG

Explore in 3D

6SQU \| pdb_00006squ	Download File View File

Crystal structure of human SHIP2 catalytic domain in complex with 1,2,4 Dimer

Whitfield, H., Brearley, C.A., Hemmings, A.M.

(2021) J Med Chem 64: 3813-3826

Released	2021-01-13
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 (protein)
Unique Ligands	D7I

Explore in 3D

6SRR \| pdb_00006srr	Download File View File

Crystal structure of human SHIP2 catalytic domain

Whitfield, H., Brearley, C.A., Hemmings, A.M.

(2021) J Med Chem 64: 3813-3826

Released	2021-01-13
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2 (protein)

Explore in 3D

7AUI \| pdb_00007aui	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with InsP6

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	IHP

Explore in 3D

7AUJ \| pdb_00007auj	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 mutation E80Q in complex with 1-InsP7

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	MG, O81

Explore in 3D

7AUK \| pdb_00007auk	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with 5-InsP7

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	I7P

Explore in 3D

7AUL \| pdb_00007aul	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with 5-InsP7 in presence of Mg

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	ACT, I7P, MG

Explore in 3D

7AUM \| pdb_00007aum	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with 5-PCF2Am-InsP5

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	KDJ

Explore in 3D

7AUN \| pdb_00007aun	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PCP-InsP8

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	4WZ, MG

Explore in 3D

7AUO \| pdb_00007auo	Download File View File

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PA-InsP8

Marquez-Monino, M.A., Gonzalez, B.

(2021) Sci Adv 7:

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Diphosphoinositol polyphosphate phosphohydrolase DDP1 (protein)
Unique Ligands	4WY

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1B55 | pdb_00001b55

1BWN | pdb_00001bwn

4A9C | pdb_00004a9c

4HN2 | pdb_00004hn2

4NZM | pdb_00004nzm

4NZN | pdb_00004nzn

4NZO | pdb_00004nzo

5BYA | pdb_00005bya

5BYB | pdb_00005byb

5ICN | pdb_00005icn

6FJK | pdb_00006fjk

6FL3 | pdb_00006fl3

6FL8 | pdb_00006fl8

6GFG | pdb_00006gfg

6GFH | pdb_00006gfh

6N5C | pdb_00006n5c

6SQU | pdb_00006squ

6SRR | pdb_00006srr

7AUI | pdb_00007aui

7AUJ | pdb_00007auj

7AUK | pdb_00007auk

7AUL | pdb_00007aul

7AUM | pdb_00007aum

7AUN | pdb_00007aun

7AUO | pdb_00007auo