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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rivas, G."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (7)
	Hordeum vulgare (2)
	Salasvirus phi29 (2)
	Escherichia coli W (1)
	Pseudomonas savastanoi (1)

Taxonomy

	Eukaryota (9)
	Bacteria (2)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (12)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (13)
	DNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (1)
	2015 - 2019 (8)
	2020 - 2024 (3)

Enzyme Classification Name

Hydrolases (1)

Symmetry Type

	Asymmetric (5)
	Dihedral (5)
	Cyclic (3)

SCOP Classification

	All beta proteins (3)
	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)

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1 to 13 of 13 Structures

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1HKQ	Download File View File

PPS10 plasmid DNA replication initiator protein RepA. Replication inactive, dimeric N-terminal domain.

Giraldo, R., Fernandez-Tornero, C., Evans, P.R., Diaz-Orejas, R., Romero, A.

(2003) Nat Struct Biol 10: 496

Released	2003-05-29
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Pseudomonas savastanoi
Macromolecule	REPLICATION PROTEIN (protein)
Unique Ligands	BEZ, HG, PO4

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2NAQ	Download File View File

3D NMR solution structure of NLRP3 PYD

de Alba, E., Oroz, J.

(2016) J Biol Chem 291: 19487-19501

Released	2016-07-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	NACHT, LRR and PYD domains-containing protein 3 (protein)

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3BJ4	Download File View File

The KCNQ1 (Kv7.1) C-terminus, a multi-tiered scaffold for subunit assembly and protein interaction

Wiener, R., Hirsch, J.A.

(2008) J Biol Chem 283: 5815-5830

Released	2008-01-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel subfamily KQT member 1 (protein)
Unique Ligands	NI

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6FWD	Download File View File

Crystal structure of human transthyretin double mutant R34G/T119M at pH 5.5

Esperante, S., Ventura, S., Reverter, D., Varejao, N.

(2021) J Biol Chem 297: 101039-101039

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.576 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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6FXU	Download File View File

Crystal structure of human transthyretin mutant T119M at pH 5.5

Varejao, N., Esperante, S., Ventura, S., Reverter, D.

(2021) J Biol Chem 297: 101039-101039

Released	2019-03-20
Method	X-RAY DIFFRACTION 1.359 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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6FZL	Download File View File

Crystal structure of human transthyretin double mutant K35T/T119M

Esperante, S., Ventura, S., Reverter, D., Varejao, N.

(2021) J Biol Chem 297: 101039-101039

Released	2019-03-27
Method	X-RAY DIFFRACTION 1.446 Å
Organisms	Homo sapiens
Macromolecule	Transthyretin (protein)

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6HB4	Download File View File

TFAM in Complex with Site-Y

Cuppari, A., Fernandez-Millan, P., Rubio-Cosials, A., Tarres-Sole, A., Lyonnais, S., Sola, M.

(2019) Nucleic Acids Res 47: 6519-6537

Released	2019-06-05
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Homo sapiens
Macromolecule	Transcription factor A, mitochondrial (protein) DNA (5'CPTPGPTPGPCPAPGPAPCPAPTPTPCPAPAPTPTPGPTPTPA)-3') (nucleic acid) DNA (5'-D(TPAPAPCPAPAPTPTPGPAPAPTPGPTPCPTPGPCPAPCPAPG)-3') (nucleic acid)
Unique Ligands	1PE, GOL

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6HC3	Download File View File

TFAM bound to Site-X

Fernandez-Millan, P., Cuppari, A., Tarres-Sole, A., Rubio-Cosials, A., Lyonnais, S., Sola, M.

(2019) Nucleic Acids Res 47: 6519-6537

Released	2019-06-05
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Transcription factor A, mitochondrial (protein) DNA (5'-D(TPTPTPGPGPTPGPGPAPAPAPTPTPTPTPTPTPGPTPTPAPG)-3') (nucleic acid) DNA/RNA (5'-D(TPAPAPCPAPAPAPAPAPAPTPTPTPCPCPAPCPCPAPAPAPC)-3') (nucleic acid)
Unique Ligands	1PE, TLA

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6QIY	Download File View File

CI-2, conformation 1

Romero, A., Ruiz, F.M.

(2019) Nat Commun 10: 5703-5703

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Hordeum vulgare
Macromolecule	Subtilisin-chymotrypsin inhibitor-2A (protein)

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6QIZ	Download File View File

CI-2, conformation 2

Romero, A., Ruiz, F.M.

(2019) Nat Commun 10: 5703-5703

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Hordeum vulgare
Macromolecule	Subtilisin-chymotrypsin inhibitor-2A (protein)

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8A39	Download File View File

Crystal Structure of PaaX from Escherichia coli W

Molina, R., Alba-Perez, A., Hermoso, J.A.

(2024) Int J Biol Macromol 254: 127935-127935

Released	2023-07-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli W
Macromolecule	DNA-binding transcriptional repressor of phenylacetic acid degradation, aryl-CoA responsive (protein)
Unique Ligands	GOL, SO4

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8PW2	Download File View File

Protein p6 from bacteriophage phi29, C-terminal delta31 truncated version

Alcorlo Pages, M., Hermoso Dominguez, J.

(2024) Nucleic Acids Res 52: 2045-2065

Released	2024-01-17
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Salasvirus phi29
Macromolecule	Histone-like protein p6 (protein)

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8PW4	Download File View File

Protein p6 from bacteriophage phi29, C-terminal delta20 truncated version

Alcorlo Pages, M., Hermoso Dominguez, J.

(2024) Nucleic Acids Res 52: 2045-2065

Released	2024-01-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salasvirus phi29
Macromolecule	Histone-like protein p6 (protein)

1 to 13 of 13 Structures

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Structure Determination Methodology

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