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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Sarkar, D."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (22)
	Mus musculus (6)
	Bos taurus (4)
	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (2)
	Escherichia coli O157:H7 (2)
	Saccharomyces cerevisiae S288C (2)
	Bradyrhizobium diazoefficiens USDA 110 (1)
	Escherichia coli K-12 (1)
	Francisella tularensis subsp. holarctica LVS (1)
	Gallus gallus (1)

More...

Taxonomy

	Eukaryota (30)
	Bacteria (8)

Experimental Method

	X-RAY DIFFRACTION (30)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

	Protein (36)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (13)
	2.0 - 2.5 (8)
	2.5 - 3.0 (4)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (17)
	2015 - 2019 (7)
	2020 - 2024 (12)

Enzyme Classification Name

	Oxidoreductases (14)
	Transferases (8)
	Hydrolases (6)
	Isomerases (1)

Symmetry Type

	Cyclic (18)
	Asymmetric (10)
	Dihedral (9)

SCOP Classification

	Alpha and beta proteins (a/b) (14)
	Artifacts (4)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 36 Structures

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3HAZ \| pdb_00003haz	Download File View File

Crystal structure of bifunctional proline utilization A (PutA) protein

Tanner, J.J.

(2010) Proc Natl Acad Sci U S A 107: 2878-2883

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bradyrhizobium diazoefficiens USDA 110
Macromolecule	Proline dehydrogenase (protein)
Unique Ligands	FAD, GOL, NAD, SO4

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3ITG \| pdb_00003itg	Download File View File

Structure the proline utilization A proline dehydrogenase domain (PutA86-630) inactivated with N-propargylglycine

Tanner, J.J.

(2010) Biochemistry 49: 560-569

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli K-12
Macromolecule	Bifunctional protein putA (protein)
Unique Ligands	FDA

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3V9G \| pdb_00003v9g	Download File View File

Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase

Tanner, J.J., Srivastava, D.

(2012) J Mol Biology 420: 176-189

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)

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3V9H \| pdb_00003v9h	Download File View File

Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase mutant S352A

Tanner, J.J., Singh, R.K.

(2012) J Mol Biology 420: 176-189

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	SO4

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3V9I \| pdb_00003v9i	Download File View File

Crystal structure of human 1-pyrroline-5-carboxylate dehydrogenase mutant S352L

Tanner, J.J., Singh, R.K.

(2012) J Mol Biology 420: 176-189

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)

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3V9J \| pdb_00003v9j	Download File View File

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with sulfate ion

Tanner, J.J., Srivastava, D.

(2012) J Mol Biology 420: 176-189

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.299 Å
Organisms	Mus musculus
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	GOL, SO4

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3V9K \| pdb_00003v9k	Download File View File

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with the product glutamate

Tanner, J.J., Srivastava, D.

(2012) J Mol Biology 420: 176-189

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.501 Å
Organisms	Mus musculus
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	GLU, GOL

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3V9L \| pdb_00003v9l	Download File View File

Crystal structure of mouse 1-pyrroline-5-carboxylate dehydrogenase complexed with NAD+

Tanner, J.J., Srivastava, D.

(2012) J Mol Biology 420: 176-189

Released	2012-05-02
Method	X-RAY DIFFRACTION 1.502 Å
Organisms	Mus musculus
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	GOL, NAD

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4E3U \| pdb_00004e3u	Download File View File

Crystal Structure of Hen Egg White Lysozyme Cryoprotected in Proline

Tanner, J.J., Pemberton, T.A.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1010-1018

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	CL, PRO

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4E3V \| pdb_00004e3v	Download File View File

Crystal Structure of XYLOSE ISOMERASE FROM STREPTOMYCES RUBIGINOSUS Cryoprotected in Proline

Tanner, J.J., Pemberton, T.A.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1010-1018

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.503 Å
Organisms	Streptomyces rubiginosus
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MG, MN, PRO, SO4

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4E3W \| pdb_00004e3w	Download File View File

Crystal Structure Francisella tularensis histidine acid phosphatase cryoprotected with proline

Tanner, J.J., Pemberton, T.A.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1010-1018

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Francisella tularensis subsp. holarctica LVS
Macromolecule	Acid phosphatase (protein)
Unique Ligands	PRO, SO4

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4E3X \| pdb_00004e3x	Download File View File

Crystal Structure of Mus musculus 1-pyrroline-5-carboxylate dehydrogenase cryoprotected in proline

Tanner, J.J., Pemberton, T.A.

(2012) Acta Crystallogr D Biol Crystallogr 68: 1010-1018

Released	2012-07-25
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Mus musculus
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	16P, PGE, PRO

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4H6Q \| pdb_00004h6q	Download File View File

Structure of oxidized Deinococcus radiodurans proline dehydrogenase complexed with L-tetrahydrofuroic acid

Min, L., Tanner, J.J.

(2012) Biochemistry 51: 10099-10108

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.359 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Proline dehydrogenase (protein)
Unique Ligands	FAD, GOL, TFB

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4H6R \| pdb_00004h6r	Download File View File

Structure of reduced Deinococcus radiodurans proline dehydrogenase

Min, L., Tanner, J.J.

(2012) Biochemistry 51: 10099-10108

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539
Macromolecule	Proline dehydrogenase (protein)
Unique Ligands	ACT, FDA

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4OE4 \| pdb_00004oe4	Download File View File

Crystal Structure of Yeast ALDH4A1 Complexed with NAD+

Tanner, J.J.

(2014) Biochemistry 53: 1350-1359

Released	2014-02-19
Method	X-RAY DIFFRACTION 2.168 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	NAD

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4OE5 \| pdb_00004oe5	Download File View File

Structure of Human ALDH4A1 Crystallized in Space Group P21

Tanner, J.J.

(2014) Biochemistry 53: 1350-1359

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)
Unique Ligands	1PE, MG

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4OE6 \| pdb_00004oe6	Download File View File

Crystal Structure of Yeast ALDH4A1

Tanner, J.J.

(2014) Biochemistry 53: 1350-1359

Released	2014-02-19
Method	X-RAY DIFFRACTION 1.951 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial (protein)

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6B6U \| pdb_00006b6u	Download File View File

Pyruvate Kinase M2 mutant - S437Y

Srivastava, D., Dey, M.

(2017) Biochemistry 56: 6517-6520

Released	2017-12-20
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	B3P, CL, EDO, K, MG, OXL, PEG, PG4, SCN

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6N84 \| pdb_00006n84	Download File View File

MBP-fusion protein of transducin-alpha residues 327-350

Srivastava, D., Gakhar, L., Artemyev, N.O.

(2019) Nat Commun 10: 3084-3084

Released	2019-07-10
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli O157:H7 Homo sapiens
Macromolecule	Maltose/maltodextrin-binding periplasmic protein,Guanine nucleotide-binding protein G(t) subunit alpha-2 (protein)
Unique Ligands	SO4
Unique branched monosaccharides	GLC

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6N85 \| pdb_00006n85	Download File View File

Resistance to inhibitors of cholinesterase 8A (Ric8A) protein in complex with MBP-tagged transducin-alpha residues 327-350

Srivastava, D., Gakhar, L., Artemyev, N.O.

(2019) Nat Commun 10: 3084-3084

Released	2019-07-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus Escherichia coli O157:H7 Homo sapiens
Macromolecule	Maltose/maltodextrin-binding periplasmic protein,Guanine nucleotide-binding protein G(t) subunit alpha-2 (protein) Synembryn-A (protein)
Unique branched monosaccharides	GLC

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6N86 \| pdb_00006n86	Download File View File

Resistance to inhibitors of cholinesterase 8A (Ric8A) protein

Srivastava, D., Gakhar, L., Artemyev, N.O.

(2019) Nat Commun 10: 3084-3084

Released	2019-07-10
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Bos taurus
Macromolecule	Synembryn-A (protein)

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6NU1 \| pdb_00006nu1	Download File View File

Crystal Structure of Human PKM2 in Complex with L-cysteine

Srivastava, D., Nandi, S., Dey, M.

(2019) Biochemistry 58: 3669-3682

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	CYS, FBP, K, MG, OXL

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6NU5 \| pdb_00006nu5	Download File View File

Pyruvate Kinase M2 Mutant - S437Y in Complex with L-cysteine

Srivastava, D., Nandi, S., Dey, M.

(2019) Biochemistry 58: 3669-3682

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	B3P, CYS, EDO, K, MG, OXL, SCN

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6NUB \| pdb_00006nub	Download File View File

Pyruvate Kinase M2 Mutant - S437Y in Complex with L-serine

Srivastava, D., Nandi, S., Dey, M.

(2019) Biochemistry 58: 3669-3682

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	B3P, EDO, K, MG, OXL, PEG, PG4, SCN, SER

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6WP3 \| pdb_00006wp3	Download File View File

Pyruvate Kinase M2 Mutant-K433Q

Nandi, S., Razzaghi, M., Srivastava, D., Dey, M.

(2020) J Biological Chem 295: 17425-17440

Released	2020-10-07
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Pyruvate kinase PKM (protein)
Unique Ligands	CL, GOL, K, MG, NO3, OXL

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3HAZ | pdb_00003haz

3ITG | pdb_00003itg

3V9G | pdb_00003v9g

3V9H | pdb_00003v9h

3V9I | pdb_00003v9i

3V9J | pdb_00003v9j

3V9K | pdb_00003v9k

3V9L | pdb_00003v9l

4E3U | pdb_00004e3u

4E3V | pdb_00004e3v

4E3W | pdb_00004e3w

4E3X | pdb_00004e3x

4H6Q | pdb_00004h6q

4H6R | pdb_00004h6r

4OE4 | pdb_00004oe4

4OE5 | pdb_00004oe5

4OE6 | pdb_00004oe6

6B6U | pdb_00006b6u

6N84 | pdb_00006n84

6N85 | pdb_00006n85

6N86 | pdb_00006n86

6NU1 | pdb_00006nu1

6NU5 | pdb_00006nu5

6NUB | pdb_00006nub

6WP3 | pdb_00006wp3