RCSB PDB: Search

1QYR	Download File View File

2.1 Angstrom Crystal structure of KsgA: A Universally Conserved Adenosine Dimethyltransferase

O'Farrell, H.C., Scarsdale, J.N., Wright, H.T., Rife, J.P.

(2004) J Mol Biology 339: 337-353

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	High level Kasugamycin resistance protein (protein)

3FTC	Download File View File

Crystal structure of A. aeolicus KsgA at 1.72-Angstrom resolution

(2009) Structure 17: 374-385

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Dimethyladenosine transferase (protein)

3FTD	Download File View File

Crystal structure of A. aeolicus KsgA at 1.44-Angstrom resolution

(2009) Structure 17: 374-385

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Dimethyladenosine transferase (protein)

3FTE	Download File View File

Crystal structure of A. aeolicus KsgA in complex with RNA

(2009) Structure 17: 374-385

Released	2009-03-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Dimethyladenosine transferase (protein) 5'-R(PAPAPCPCPGPUPAPGPGPGPGPAPAPCPCPUPGPCPGPGPUPU)-3' (nucleic acid)

3FTF	Download File View File

Crystal structure of A. aeolicus KsgA in complex with RNA and SAH

(2009) Structure 17: 374-385

Released	2009-03-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	Dimethyladenosine transferase (protein) 5'-R(PAPAPCPCPGPUPAPGPGPGPGPAPAPCPCPUPGPCPGPGPUPU)-3' (nucleic acid)
Unique Ligands	K, SAH

3FUT	Download File View File

Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space group P21212

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)

3FUU	Download File View File

T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with Adenosine in space group P212121

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.53 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)
Unique Ligands	ADN

3FUV	Download File View File

Apo-form of T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in space group P43212

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)

3FUW	Download File View File

T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)
Unique Ligands	MTA

3FUX	Download File View File

T. thermophilus 16S rRNA A1518 and A1519 methyltransferase (KsgA) in complex with 5'-methylthioadenosine in space group P212121

Demirci, H., Belardinelli, R., Seri, E., Gregory, S.T., Gualerzi, C., Dahlberg, A.E., Jogl, G.

(2009) J Mol Biology 388: 271-282

Released	2009-03-31
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Thermus thermophilus HB8
Macromolecule	Dimethyladenosine transferase (protein)
Unique Ligands	MTA

3R9X	Download File View File

Crystal structure of Era in complex with MgGDPNP, nucleotides 1506-1542 of 16S ribosomal RNA, and KsgA

(2011) Proc Natl Acad Sci U S A 108: 10156-10161

Released	2011-06-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aquifex aeolicus
Macromolecule	GTPase Era (protein) Ribosomal RNA small subunit methyltransferase A (protein) RNA301 (nucleic acid)
Unique Ligands	ACT, GNP, MG, MRD

Scarsdale, J.N., Musayev, F.N., Rife, J.P.

3TPZ	Download File View File

2.1 Angstrom crystal structure of the L114P mutant of E. Coli KsgA

(2012) Biochemistry 51: 466-474

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	CL, PO4

3TQS	Download File View File

Structure of the dimethyladenosine transferase (ksgA) from Coxiella burnetii

Rudolph, M., Cheung, J., Franklin, M.C., Cassidy, M., Gary, E., Burshteyn, F., Love, J.

(2015) Proteins 83: 2124-2136

Released	2011-09-28
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Coxiella burnetii
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

3UZU	Download File View File

The structure of the Ribosomal RNA small subunit methyltransferase A from Burkholderia pseudomallei

To be published

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Burkholderia pseudomallei
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	EDO

4ADV	Download File View File

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Boehringer, D., O'Farrell, H.C., Rife, J.P., Ban, N.

(2012) J Biological Chem 287: 10453-10459

Released	2012-02-15
Method	ELECTRON MICROSCOPY 13.5 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

4JXJ	Download File View File

Crystal Structure of Ribosomal RNA small subunit methyltransferase A from Rickettsia bellii Determined by Iodide SAD Phasing

To be published

Released	2013-05-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rickettsia bellii RML369-C
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	EDO, IOD

6IFS	Download File View File

KsgA from Bacillus subtilis 168

(2019) J Am Chem Soc 141: 1425-1429

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)

6IFT	Download File View File

KsgA from Bacillus subtilis in complex with SAM

(2019) J Am Chem Soc 141: 1425-1429

Released	2019-01-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)
Unique Ligands	SAM

6IFV	Download File View File

C-terminal truncated KsgA from Bacillus subtilis 168

(2019) J Am Chem Soc 141: 1425-1429

Released	2019-01-30
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)

6IFW	Download File View File

crystal structure of chimeric construct of KsgA with loop 1 from erm

(2019) J Am Chem Soc 141: 1425-1429

Released	2019-01-30
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)

6IFX	Download File View File

Crystal structure of chimeric KsgA with loop 12 from Erm

(2019) J Am Chem Soc 141: 1425-1429

Released	2019-02-06
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Ribosomal RNA small subunit methyltransferase A (protein)

7AFO	Download File View File

Bacterial 30S ribosomal subunit assembly complex state B (body domain)

Schedlbauer, A., Iturrioz, I., Ochoa-Lizarralde, B., Diercks, T., Kaminishi, T., Capuni, R., Astigarraga, E., Gil-Carton, D., Fucini, P., Connell, S.

(2021) Sci Adv 7:

Released	2021-07-07
Method	ELECTRON MICROSCOPY 3.93 Å
Organisms	Escherichia coli
Macromolecule	Unique protein chains: 14 Unique nucleic acid chains: 1
Unique Ligands	MG

7O5H	Download File View File

Ribosomal methyltransferase KsgA bound to small ribosomal subunit

Stephan, N.C., Ries, A.B., Boehringer, D., Ban, N.

(2021) Nucleic Acids Res 49: 6389-6398

Released	2021-06-16
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Escherichia coli Escherichia coli K-12
Macromolecule	Unique protein chains: 14 Unique nucleic acid chains: 1
Unique Ligands	MG

7V2L	Download File View File

T.thermophilus 30S ribosome with KsgA, class K1k2

Raina, R., Singh, J., Anand, R., Vinothkumar, K.R.

(2022) ACS Chem Biol 17: 829-839

Released	2022-04-06
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168 Thermus thermophilus HB8
Macromolecule	Unique protein chains: 21 Unique nucleic acid chains: 1
Unique Ligands	ZN