RCSB PDB: Search

1D2V	Download File View File

CRYSTAL STRUCTURE OF BROMIDE-BOUND HUMAN MYELOPEROXIDASE ISOFORM C AT PH 5.5

Fiedler, T.J., Davey, C.A., Fenna, R.E.

(2000) J Biol Chem 275: 11964-11971

Released	2000-04-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	MYELOPEROXIDASE (protein)
Unique Ligands	ACT, BR, CA, HEM, NAG, SO4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

1D5L	Download File View File

CRYSTAL STRUCTURE OF CYANIDE-BOUND HUMAN MYELOPEROXIDASE ISOFORM C AT PH 5.5

Fiedler, T.J., Davey, C.A., Fenna, R.E.

(2001) Biochemistry 40: 13990-13997

Released	2001-12-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	MYELOPEROXIDASE (protein)
Unique Ligands	ACT, CA, CL, CYN, HEM, NAG, SO4
Unique branched monosaccharides	BMA, FUC, MAN, NAG

1KX3	Download File View File

X-Ray Structure of the Nucleosome Core Particle, NCP146, at 2.0 A Resolution

Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.

(2002) J Mol Biol 319: 1097-1113

Released	2002-12-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	histone H2A.1 (protein) histone H2B.2 (protein) histone H3 (protein) histone H4 (protein) DNA (5'(ATCAATATCCACCTGCAGATTCTACCAAAAGTGTATTTGGAAACTGCTCCATCAAAAGGCATGTTCAGCTGAATTCAGCTGAACATGCCTTTTGATGGAGCAGTTTCCAAATACACTTTTGGTAGAATCTGCAGGTGGATATTGAT)3') (nucleic acid)
Unique Ligands	MN

1KX4	Download File View File

X-Ray Structure of the Nucleosome Core Particle, NCP146b, at 2.6 A Resolution

Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.

(2002) J Mol Biol 319: 1097-1113

Released	2002-12-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	histone H2A.1 (protein) histone H2B.2 (protein) histone H3 (protein) histone H4 (protein) DNA (5'(ATCTCCAAATATCCCTTGCGGATCGTAGAAAAAGTGTGTCAAACTGCGCTATCAAAGGGAAACTTCAACTGAATTCAGTTGAAGTTTCCCTTTGATAGCGCAGTTTGACACACTTTTTCTACGATCCGCAAGGGATATTTGGAGAT)3') (nucleic acid)
Unique Ligands	CL, MN

1KX5	Download File View File

X-Ray Structure of the Nucleosome Core Particle, NCP147, at 1.9 A Resolution

Davey, C.A., Sargent, D.F., Luger, K., Maeder, A.W., Richmond, T.J.

(2002) J Mol Biol 319: 1097-1113

Released	2002-12-25
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, MN

1M41	Download File View File

Crystal structure of Escherichia coli alkanesulfonate monooxygenase SsuD at 2.3 A resolution

Eichhorn, E., Davey, C.A., Sargent, D.F., Leisinger, T., Richmond, T.J.

(2002) J Mol Biol 324: 457-468

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	FMNH2-dependent alkanesulfonate monooxygenase (protein)

2IIE	Download File View File

single chain Integration Host Factor protein (scIHF2) in complex with DNA

Bao, Q., Droege, P., Davey, C.A.

(2007) J Mol Biol 367: 731-740

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Integration host factor (protein) DNA (5'-D(DGPDCPDTPDTPDAPDTPDCPDAPDAPDTPDTPDTPDGPDTPDTPDGPDCPDAPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDCPDAPDAPDAPDAPDAPDAPDGPDCPDAPDTP*DT)-3') (nucleic acid) Phage P H' site (nucleic acid)
Unique Ligands	MN

2IIF	Download File View File

single chain Integration Host Factor mutant protein (scIHF2-K45aE) in complex with DNA

Bao, Q., Droege, P., Davey, C.A.

(2007) J Mol Biol 367: 731-740

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Escherichia coli synthetic construct
Macromolecule	Integration host factor (protein) DNA (5'-D(DGPDCPDTPDTPDAPDTPDCPDAPDAPDTPDTPDTPDGPDTPDTPDGPDCPDAPDCPDC)-3') (nucleic acid) DNA (5'-D(DGPDGPDCPDCPDAPDAPDAPDAPDAPDAPDGPDCPDAPDTP*DT)-3') (nucleic acid) Phage P H' site (nucleic acid)
Unique Ligands	MN

2NZD	Download File View File

Nucleosome core particle containing 145 bp of DNA

Ong, M.S., Richmond, T.J., Davey, C.A.

(2007) J Mol Biol 368: 1067-1074

Released	2007-04-10
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN

3B6F	Download File View File

Nucleosome core particle treated with cisplatin

(2008) Nat Chem Biol 4: 110-112

Released	2007-12-25
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN

3B6G	Download File View File

Nucleosome core particle treated with oxaliplatin

(2008) Nat Chem Biol 4: 110-112

Released	2007-12-25
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN

3KUY	Download File View File

DNA Stretching in the Nucleosome Facilitates Alkylation by an Intercalating Antitumor Agent

(2010) Nucleic Acids Res 38: 2081-2088

Released	2010-01-05
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	ATV, MN

3LEL	Download File View File

Structural Insight into the Sequence-Dependence of Nucleosome Positioning

Wu, B., Vasudevan, D., Davey, C.A.

(2010) Structure 18: 528-536

Released	2010-05-19
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN

3LJA	Download File View File

Using Soft X-Rays for a Detailed Picture of Divalent Metal Binding in the Nucleosome

(2010) J Mol Biol 398: 633-640

Released	2010-04-14
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN, SO4

Vasudevan, D., Chua, E.Y.D., Davey, C.A.

3LZ0	Download File View File

Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 1)

(2010) J Mol Biol 403: 1-10

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, MN

Vasudevan, D., Chua, E.Y.D., Davey, C.A.

3LZ1	Download File View File

Crystal Structure of Nucleosome Core Particle Composed of the Widom 601 DNA Sequence (orientation 2)

(2010) J Mol Biol 403: 1-10

Released	2010-09-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, MN

3MGP	Download File View File

Binding of Cobalt ions to the Nucleosome Core Particle

(2010) Nucleic Acids Res 38: 6301-6311

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, CO

3MGQ	Download File View File

Binding of Nickel ions to the Nucleosome Core Particle

(2010) Nucleic Acids Res 38: 6301-6311

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, NI

3MGR	Download File View File

Binding of Rubidium ions to the Nucleosome Core Particle

(2010) Nucleic Acids Res 38: 6301-6311

Released	2010-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, MN, RB

3MGS	Download File View File

Binding of Cesium ions to the Nucleosome Core particle

(2010) Nucleic Acids Res

Released	2010-06-16
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	CL, CS, MN

3MNN	Download File View File

A Ruthenium Antitumour Agent Forms Specific Histone Protein Adducts in the Nucleosome Core

Ong, M.S., Davey, C.A.

(2011) Chemistry 17: 3562-3566

Released	2011-04-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MG, MML, PTW, RU, SO4

3REH	Download File View File

2.5 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145)

(2011) Nucleic Acids Res 39: 8200-8212

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN, SO4

3REI	Download File View File

2.65 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 145 bp Alpha-Satellite DNA (NCP145) Derivatized with Triamminechloroplatinum(II) Chloride

(2011) Nucleic Acids Res 39: 8200-8212

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2
Unique Ligands	MN, PT, SO4

3REJ	Download File View File

2.55 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b)

(2011) Nucleic Acids Res 39: 8200-8212

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens Xenopus laevis
Macromolecule	Histone H2A type 1 (protein) Histone H2B 1.1 (protein) Histone H3.2 (protein) Histone H4 (protein) DNA (146-MER) (nucleic acid)
Unique Ligands	MN, SO4

3REK	Download File View File

2.6 Angstrom Crystal Structure of the Nucleosome Core Particle Assembled with a 146 bp Alpha-Satellite DNA (NCP146b) Derivatized with Oxaliplatin