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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "St John, F.J."

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This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Paenibacillus sp. JDR-2 (3)
	Acetivibrio clariflavus DSM 19732 (2)
	Bacillus subtilis (2)
	Bacillus subtilis subsp. subtilis str. 168 (2)
	Clostridium acetobutylicum ATCC 824 (1)
	Heyndrickxia coagulans (1)
	Ruminiclostridium papyrosolvens DSM 2782 (1)

Taxonomy

Bacteria (12)

Experimental Method

X-RAY DIFFRACTION (12)

Polymer Entity Type

Protein (12)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (4)
	2.0 - 2.5 (3)
	2.5 - 3.0 (2)

Release Date

	2005 - 2009 (1)
	2010 - 2014 (7)
	2015 - 2019 (1)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (8)
	Oxidoreductases (1)

Symmetry Type

Asymmetric (12)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	Artifacts (2)
	Multi-domain proteins (alpha and beta) (1)

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1 to 12 of 12 Structures

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3GTN \| pdb_00003gtn	Download File View File

Crystal Structure of XynC from Bacillus subtilis 168

St John, F.J., Hurlbert, J.C., Pozharski, E.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 499-503

Released	2009-04-28
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Bacillus subtilis
Macromolecule	Glucuronoxylanase xynC (protein)

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3KL0 \| pdb_00003kl0	Download File View File

Crystal structure of the glucuronoxylan xylanohydrolase XynC from Bacillus subtilis

St John, F.J., Hurlbert, J.C., Pozharski, E.

(2011) J Mol Biology 407: 92-109

Released	2010-12-08
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Glucuronoxylanase xynC (protein)
Unique Ligands	HIS, MLA, NA, TAR

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3KL3 \| pdb_00003kl3	Download File View File

Crystal structure of Ligand bound XynC

St John, F.J., Hurlbert, J.C., Pozharski, E.

(2011) J Mol Biology 407: 92-109

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Glucuronoxylanase xynC (protein)
Unique Ligands	BDP, DHI, GCU, PG4

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3KL5 \| pdb_00003kl5	Download File View File

Structure Analysis of a Xylanase From Glycosyl Hydrolase Family Thirty: Carbohydrate Ligand Complexes Reveal this Family of Enzymes Unique Mechanism of Substrate Specificity and Recognition

St John, F.J., Hurlbert, J.C., Pozharski, E.

(2011) J Mol Biology 407: 92-109

Released	2010-12-08
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Bacillus subtilis
Macromolecule	Glucuronoxylanase xynC (protein)
Unique branched monosaccharides	GCV, XYP

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3RDK \| pdb_00003rdk	Download File View File

Protein crystal structure of xylanase A1 of Paenibacillus sp. JDR-2

Pozharski, E., St John, F.J.

(2012) J Struct Biol 180: 303-311

Released	2012-04-04
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Paenibacillus sp. JDR-2
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, GOL, MG
Unique branched monosaccharides	GCV, XYP, XYS

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3RO8 \| pdb_00003ro8	Download File View File

Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2

Pozharski, E., St John, F.J.

(2012) J Struct Biol 180: 303-311

Released	2012-05-16
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Paenibacillus sp. JDR-2
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, MG

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4E4P \| pdb_00004e4p	Download File View File

Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2

Pozharski, E., St John, F.J.

(2012) J Struct Biol 180: 303-311

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Paenibacillus sp. JDR-2
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique Ligands	CL, MG

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4FMV \| pdb_00004fmv	Download File View File

Crystal Structure Analysis of a GH30 Endoxylanase from Clostridium papyrosolvens C71

Bales, E.B., Smith, J.K., St John, F.J., Hurlbert, J.C.

(2014) Acta Crystallogr D Biol Crystallogr 70: 2950-2958

Released	2013-06-19
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Ruminiclostridium papyrosolvens DSM 2782
Macromolecule	Glucuronoarabinoxylan endo-1,4-beta-xylanase (protein)

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6CSJ \| pdb_00006csj	Download File View File

Structure of a Bacillus coagulans polyol dehydrogenase double mutant with an acquired D-lactate dehydrogenase activity

Hurlbert, J.C., St.John, F.J.

(2020) Protein Sci 29: 2387-2397

Released	2019-07-03
Method	X-RAY DIFFRACTION 2.395 Å
Organisms	Heyndrickxia coagulans
Macromolecule	Glycerol dehydrogenase (protein)

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7N6H \| pdb_00007n6h	Download File View File

The crystal structure of the GH30 subfamily 10 enzyme, AcXbh30A from Acetivibrio clariflavus

Tan, K., St John, F.J.

(2022) FEBS Lett 596: 2449-2464

Released	2022-08-17
Method	X-RAY DIFFRACTION 1.28 Å
Organisms	Acetivibrio clariflavus DSM 19732
Macromolecule	AcXbh30A (protein)
Unique Ligands	ACT, CL

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7N6O \| pdb_00007n6o	Download File View File

The crystal structure of the GH30 subfamily 10 enzyme, AcXbh30A from Acetivibrio clariflavus in complex with xylobiose

Tan, K., St John, J.F.

(2022) FEBS Lett 596: 2449-2464

Released	2022-08-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acetivibrio clariflavus DSM 19732
Macromolecule	AcXbh30A (protein)
Unique Ligands	CL
Unique branched monosaccharides	XYP

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8UWT \| pdb_00008uwt	Download File View File

A X-ray Crystallographic Structure Model of a Glycoside Hydrolase (GH) Family 39 (GH39)-like Enzyme Encoded within a Xylan Utilization Locus of the pSOL1 Megaplasmid of Clostridium acetobutylicum

St John, F.J., Fujimoto, Z.

To be published

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Clostridium acetobutylicum ATCC 824
Macromolecule	Possible beta-xylosidase diverged, family 5/39 of glycosyl hydrolases and alpha-amylase C (Greek key) C-terminal domain (protein)
Unique Ligands	BCN, FMT, GOL, NA, PGE

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3GTN | pdb_00003gtn

Crystal Structure of XynC from Bacillus subtilis 168

3KL0 | pdb_00003kl0

Crystal structure of the glucuronoxylan xylanohydrolase XynC from Bacillus subtilis

3KL3 | pdb_00003kl3

Crystal structure of Ligand bound XynC

3KL5 | pdb_00003kl5

Structure Analysis of a Xylanase From Glycosyl Hydrolase Family Thirty: Carbohydrate Ligand Complexes Reveal this Family of Enzymes Unique Mechanism of Substrate Specificity and Recognition

3RDK | pdb_00003rdk

Protein crystal structure of xylanase A1 of Paenibacillus sp. JDR-2

3RO8 | pdb_00003ro8

Crystal structure of the catalytic domain of XynA1 from Paenibacillus sp. JDR-2

4E4P | pdb_00004e4p

Second native structure of Xylanase A1 from Paenibacillus sp. JDR-2

4FMV | pdb_00004fmv

Crystal Structure Analysis of a GH30 Endoxylanase from Clostridium papyrosolvens C71

6CSJ | pdb_00006csj

Structure of a Bacillus coagulans polyol dehydrogenase double mutant with an acquired D-lactate dehydrogenase activity

7N6H | pdb_00007n6h

The crystal structure of the GH30 subfamily 10 enzyme, AcXbh30A from Acetivibrio clariflavus

7N6O | pdb_00007n6o

The crystal structure of the GH30 subfamily 10 enzyme, AcXbh30A from Acetivibrio clariflavus in complex with xylobiose

8UWT | pdb_00008uwt

A X-ray Crystallographic Structure Model of a Glycoside Hydrolase (GH) Family 39 (GH39)-like Enzyme Encoded within a Xylan Utilization Locus of the pSOL1 Megaplasmid of Clostridium acetobutylicum

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3GTN | pdb_00003gtn

3KL0 | pdb_00003kl0

3KL3 | pdb_00003kl3

3KL5 | pdb_00003kl5

3RDK | pdb_00003rdk

3RO8 | pdb_00003ro8

4E4P | pdb_00004e4p

4FMV | pdb_00004fmv

6CSJ | pdb_00006csj

7N6H | pdb_00007n6h

7N6O | pdb_00007n6o

8UWT | pdb_00008uwt