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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tao, S."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (16)
	Influenza A virus (2)
	Mycobacterium tuberculosis H37Rv (2)
	Human immunodeficiency virus (1)
	Human immunodeficiency virus 1 (1)
	Saccharomyces cerevisiae S288C (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (16)
	Riboviria (4)
	Bacteria (2)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (5)

Polymer Entity Type

	Protein (18)
	DNA (5)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (7)

Release Date

	2010 - 2014 (2)
	2020 - 2024 (16)

Enzyme Classification Name

	Transferases (7)
	Hydrolases (2)

Symmetry Type

	Asymmetric (17)
	Cyclic (2)

SCOP Classification

	All alpha proteins (2)
	Artifacts (2)

AllSelected

1 to 18 of 18 Structures

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3KDT \| pdb_00003kdt	Download File View File

Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-(methoxycarbonyl)glycine

Muckelbauer, J.K.

(2010) J Med Chem 53: 2854-2864

Released	2010-04-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor alpha (protein)
Unique Ligands	7HA

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3KDU \| pdb_00003kdu	Download File View File

Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-((4-methylphenoxy)carbonyl)glycine

Muckelbauer, J.K.

(2010) J Med Chem 53: 2854-2864

Released	2010-04-28
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor alpha (protein)
Unique Ligands	NKS

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7T78 \| pdb_00007t78	Download File View File

CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND DIETHYL ({2-[3-(4-METHANESULFONYLPHENO XY)-5-{[(2S)-1-METHOXYPROPAN-2-YL]OXY}BENZAMIDO]-1,3-THIAZ OL-4-YL}METHYL)PHOSPHONATE

Muckelbauer, J.K.

(2022) J Med Chem 65: 4291-4317

Released	2022-03-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Hexokinase-4 (protein)
Unique Ligands	EDO, G2T, GLC, NA

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7T79 \| pdb_00007t79	Download File View File

CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND AKA DIETHYL {[3-(3-{[5-(AZETIDINE-1-CARBON YL)PYRAZIN-2-YL]OXY}-5-(PROPAN-2-YLOXY)BENZAMIDO)-1H- PYRAZOL-1-YL]METHYL}PHOSPHONATE

Muckelbauer, J.K.

(2022) J Med Chem 65: 4291-4317

Released	2022-03-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Hexokinase-4 (protein)
Unique Ligands	G1S, GLC

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7WNT \| pdb_00007wnt	Download File View File

RNase J from Mycobacterium tuberculosis

Li, J., Bao, L., Hu, J., Zhan, B., Li, Z.

(2023) Nat Commun 14: 2280

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Ribonuclease J (protein)
Unique Ligands	ZN

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7WNU \| pdb_00007wnu	Download File View File

Mycobacterium tuberculosis Rnase J complex with 7nt RNA

Li, J., Hu, J., Bao, L., Zhan, B., Li, Z.

(2023) Nat Commun 14: 2280

Released	2023-01-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	Ribonuclease J (protein) RNA (5'-R(PAPAPAPAPAPAP*A)-3') (nucleic acid)
Unique Ligands	ZN

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8IEG \| pdb_00008ieg	Download File View File

Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex

Ai, H., Deng, Z., Pan, M., Liu, L.

(2023) Mol Cell 83: 3080-3094.e14

Released	2023-09-06
Method	ELECTRON MICROSCOPY 3.44 Å
Organisms	Homo sapiens Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	ZN

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8IEJ \| pdb_00008iej	Download File View File

RNF20-RNF40/hRad6A-Ub/nucleosome complex

Ai, H., Deng, Z., Sun, M., Du, Y., Pan, M., Liu, L.

(2023) Mol Cell 83: 3080-3094.e14

Released	2023-09-06
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ZN

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8X7I \| pdb_00008x7i	Download File View File

Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy

Ai, H.S., Tong, Z.B., Deng, Z.H., Pan, M., Liu, L.

(2024) bioRxiv

Released	2024-08-07
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ZN

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8X7J \| pdb_00008x7j	Download File View File

Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy

Ai, H.S., Tong, Z.B., Deng, Z.H., Pan, M., Liu, L.

(2024) bioRxiv

Released	2024-08-07
Method	ELECTRON MICROSCOPY 3.39 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 8 Unique nucleic acid chains: 2
Unique Ligands	ZN

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8X7K \| pdb_00008x7k	Download File View File

Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)

Ai, H.S., Tong, Z.B., Deng, Z.H., Pan, M., Liu, L.

(2024) bioRxiv

Released	2024-08-07
Method	ELECTRON MICROSCOPY 3.27 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7 Unique nucleic acid chains: 2
Unique Ligands	ZN

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9BL2 \| pdb_00009bl2	Download File View File

KIR3DL1001 in complex with HLA-B57:03 presenting the AW10 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Catenin alpha-1 peptide (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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9BL3 \| pdb_00009bl3	Download File View File

KIR3DL1114 in complex with HLA-B57:03 presenting the AW10 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Catenin alpha-1 peptide (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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9BL4 \| pdb_00009bl4	Download File View File

KIR3DL1086 in complex with HLA-B57:03 presenting the AW10 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Catenin alpha-1 peptide (protein) HLA-B alpha chain (B*5703GB) (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein)
Unique Ligands	NAG

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9BL5 \| pdb_00009bl5	Download File View File

KIR3DL1001 in complex with HLA-A24:02 presenting the TW9 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein) Polymerase basic protein 2 peptide (protein)
Unique Ligands	NAG

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9BL6 \| pdb_00009bl6	Download File View File

KIR3DL1114 in complex with HLA-A24:02 presenting the TW9 peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Influenza A virus
Macromolecule	Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein) Polymerase basic protein 2 peptide (protein)
Unique Ligands	NAG

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9BL9 \| pdb_00009bl9	Download File View File

KIR3DL1114 in complex with HLA-A24:02 presenting the NEF peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Beta-2-microglobulin (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein) NEF peptide (protein)
Unique Ligands	NAG

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9BLA \| pdb_00009bla	Download File View File

KIR3DL1086 in complex with HLA-A24:02 presenting the NEF peptide

Faoro, C., Rossjohn, J.

(2024) Cell 187: 7008

Released	2024-11-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Beta-2-microglobulin (protein) C-terminal core peptide (protein) Killer cell immunoglobulin-like receptor 3DL1 (protein) MHC class I antigen (protein)
Unique Ligands	NAG

1 to 18 of 18 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3KDT | pdb_00003kdt

Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-(methoxycarbonyl)glycine

3KDU | pdb_00003kdu

Crystal structure of peroxisome proliferator-activatedeceptor alpha (PPARalpha) complex with N-3-((2-(4-Chlorophenyl)-5-methyl-1,3-oxazol-4-yl)methoxy)benzyl)-N-((4-methylphenoxy)carbonyl)glycine

7T78 | pdb_00007t78

CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND DIETHYL ({2-[3-(4-METHANESULFONYLPHENO XY)-5-{[(2S)-1-METHOXYPROPAN-2-YL]OXY}BENZAMIDO]-1,3-THIAZ OL-4-YL}METHYL)PHOSPHONATE

7T79 | pdb_00007t79

CRYSTAL STRUCTURE OF GLUCOKINASE (HEXOKINASE 4) COMPLEXED WITH LIGAND AKA DIETHYL {[3-(3-{[5-(AZETIDINE-1-CARBON YL)PYRAZIN-2-YL]OXY}-5-(PROPAN-2-YLOXY)BENZAMIDO)-1H- PYRAZOL-1-YL]METHYL}PHOSPHONATE

7WNT | pdb_00007wnt

RNase J from Mycobacterium tuberculosis

7WNU | pdb_00007wnu

Mycobacterium tuberculosis Rnase J complex with 7nt RNA

8IEG | pdb_00008ieg

Bre1(mRBD-RING)/Rad6-Ub/nucleosome complex

8IEJ | pdb_00008iej

RNF20-RNF40/hRad6A-Ub/nucleosome complex

8X7I | pdb_00008x7i

Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy

8X7J | pdb_00008x7j

Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy

8X7K | pdb_00008x7k

Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)

9BL2 | pdb_00009bl2

KIR3DL1001 in complex with HLA-B57:03 presenting the AW10 peptide

9BL3 | pdb_00009bl3

KIR3DL1114 in complex with HLA-B57:03 presenting the AW10 peptide

9BL4 | pdb_00009bl4

KIR3DL1086 in complex with HLA-B57:03 presenting the AW10 peptide

9BL5 | pdb_00009bl5

KIR3DL1001 in complex with HLA-A24:02 presenting the TW9 peptide

9BL6 | pdb_00009bl6

KIR3DL1114 in complex with HLA-A24:02 presenting the TW9 peptide

9BL9 | pdb_00009bl9

KIR3DL1114 in complex with HLA-A24:02 presenting the NEF peptide

9BLA | pdb_00009bla

KIR3DL1086 in complex with HLA-A24:02 presenting the NEF peptide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3KDT | pdb_00003kdt

3KDU | pdb_00003kdu

7T78 | pdb_00007t78

7T79 | pdb_00007t79

7WNT | pdb_00007wnt

7WNU | pdb_00007wnu

8IEG | pdb_00008ieg

8IEJ | pdb_00008iej

8X7I | pdb_00008x7i

8X7J | pdb_00008x7j

8X7K | pdb_00008x7k

9BL2 | pdb_00009bl2

9BL3 | pdb_00009bl3

9BL4 | pdb_00009bl4

9BL5 | pdb_00009bl5

9BL6 | pdb_00009bl6

9BL9 | pdb_00009bl9

9BLA | pdb_00009bla