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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Thornberry, N.A."

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Search Summary

This query matches 68 Structures.

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Structure Determination Methodology

experimental (68)

Scientific Name of Source Organism

	Homo sapiens (34)
	Gallus gallus (6)
	Kurthia massiliensis (6)
	Mus musculus (5)
	synthetic construct (4)
	Staphylococcus aureus (3)
	Aplysia californica (2)
	Helicobacter pylori 26695 (2)
	Klebsiella phage SH-Kp 152410 (2)
	Rattus norvegicus (2)

More...

Taxonomy

	Eukaryota (51)
	Bacteria (12)
	other sequences (4)
	Archaea (2)
	Duplodnaviria (2)
	Riboviria (1)

Experimental Method

	ELECTRON MICROSCOPY (34)
	X-RAY DIFFRACTION (33)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (68)
	DNA (6)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (14)
	2.5 - 3.0 (21)
	3.0 - 3.5 (17)
	3.5 - 4.0 (8)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (12)
	2005 - 2009 (7)
	2010 - 2014 (7)
	2015 - 2019 (10)
	2020 - 2024 (27)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (19)
	Oxidoreductases (7)
	Transferases (4)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (33)
	mpstruc (32)
	OPM (30)
	MemProtMD (27)

Symmetry Type

	Cyclic (38)
	Asymmetric (29)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (19)
	Alpha and beta proteins (a+b) (6)
	Artifacts (4)
	All alpha proteins (2)
	All beta proteins (1)

AllSelected

1 to 25 of 68 Structures

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1DPR	Download File View File

STRUCTURES OF THE APO-AND METAL ION ACTIVATED FORMS OF THE DIPHTHERIA TOX REPRESSOR FROM CORYNEBACTERIUM DIPHTHERIAE

Schiering, N., Tao, X., Murphy, J., Petsko, G.A., Ringe, D.

(1995) Proc Natl Acad Sci U S A 92: 9843-9850

Released	1995-09-15
Method	X-RAY DIFFRACTION 3 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	DIPHTHERIA TOX REPRESSOR (protein)

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1FYV	Download File View File

CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR1

Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J.L., Tong, L.

(2000) Nature 408: 111-115

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 1 (protein)

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1FYW	Download File View File

CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR2

Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J.L., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2000) Nature 408: 111-115

Released	2000-11-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 2 (protein)

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1FYX	Download File View File

CRYSTAL STRUCTURE OF P681H MUTANT OF TIR DOMAIN OF HUMAN TLR2

Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J.L., Tong, L.

(2000) Nature 408: 111-115

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 2 (protein)

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1LXJ	Download File View File

X-RAY STRUCTURE OF YBL001c NORTHEAST STRUCTURAL GENOMICS (NESG) CONSORTIUM TARGET YTYst72

Tao, X., Khayat, R., Christendat, D., Savchenko, A., Xu, X., Edwards, A., Arrowsmith, C.H., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2003) Proteins 52: 478-480

Released	2003-07-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HYPOTHETICAL 11.5KDA PROTEIN IN HTB2-NTH2 INTERGENIC REGION (protein)
Unique Ligands	SO4

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1LXN	Download File View File

X-RAY STRUCTURE OF MTH1187 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT272

Tao, X., Khayat, R., Christendat, D., Savchenko, A., Xu, X., Edwards, A., Arrowsmith, C.H., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2003) Proteins 52: 478-480

Released	2003-07-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	HYPOTHETICAL PROTEIN MTH1187 (protein)
Unique Ligands	SO4

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1O77	Download File View File

CRYSTAL STRUCTURE OF THE C713S MUTANT OF THE TIR DOMAIN OF HUMAN TLR2

Tao, X., Xu, Y., Ye, Z., Beg, A.A., Tong, L.

(2002) Biochem Biophys Res Commun 299: 216

Released	2002-11-21
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 2 (protein)

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1PDV	Download File View File

Crystal structure of human DJ-1, P 31 2 1 space group

Tao, X., Tong, L.

(2003) J Biol Chem 278: 31372-31379

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DJ-1 (protein)

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1PDW	Download File View File

Crystal structure of human DJ-1, P 1 21 1 space group

Tao, X., Tong, L.

(2003) J Biol Chem 278: 31372-31379

Released	2003-06-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	DJ-1 (protein)

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1PE0	Download File View File

Crystal structure of the K130R mutant of human DJ-1

Tao, X., Tong, L.

(2003) J Biol Chem 278: 31372-31379

Released	2003-06-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	DJ-1 (protein)

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1PJ2	Download File View File

Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme in a pentary complex with natural substrate malate, cofactor NADH, Mn++, and allosteric activator fumarate

Tao, X., Yang, Z., Tong, L.

(2003) Structure 11: 1141-1150

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	FUM, LMR, MN, NAI

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1PJ3	Download File View File

Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme in a pentary complex with natural substrate pyruvate, cofactor NAD+, Mn++, and allosteric activator fumarate.

Tao, X., Yang, Z., Tong, L.

(2003) Structure 11: 1141-1150

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	FUM, MN, NAD, PYR

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1PJ4	Download File View File

Crystal structure of human mitochondrial NAD(P)+-dependent malic enzyme in a pentary complex with natural substrate malate, ATP, Mn++, and allosteric activator fumarate.

Tao, X., Yang, Z., Tong, L.

(2003) Structure 11: 1141-1150

Released	2003-09-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent malic enzyme, mitochondrial (protein)
Unique Ligands	ATP, FUM, MLT, MN

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2GVG	Download File View File

Crystal Structure of human NMPRTase and its complex with NMN

Khan, J.A., Tao, X., Tong, L.

(2006) Nat Struct Mol Biol 13: 582-588

Released	2006-06-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Nicotinamide phosphoribosyltransferase (protein)
Unique Ligands	NMN, PO4

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2GVJ	Download File View File

Crystal Structure of Human NMPRTase in complex with FK866

Khan, J.A., Tao, X., Tong, L.

(2006) Nat Struct Mol Biol 13: 582-588

Released	2006-06-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Nicotinamide phosphoribosyltransferase (protein)
Unique Ligands	DGB

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2GVL	Download File View File

Crystal Structure of Murine NMPRTase

Khan, J.A., Tao, X., Tong, L.

(2006) Nat Struct Mol Biol 13: 582-588

Released	2006-07-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	Nicotinamide phosphoribosyltransferase (protein)

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2JS7	Download File View File

Solution NMR structure of human myeloid differentiation primary response (MyD88). Northeast Structural Genomics target HR2869A

Rossi, P., Ramelot, T.A., Tao, X., Ciano, M., Ho, C., Ma, L.-C., Xiao, R., Acton, T.B., Kennedy, M.A., Tong, L., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-10-23
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Myeloid differentiation primary response protein MyD88 (protein)

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2OUC	Download File View File

Crystal structure of the MAP kinase binding domain of MKP5

Tao, X., Tong, L.

(2007) Protein Sci 16: 880-886

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 10 (protein)

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2OUD	Download File View File

Crystal structure of the catalytic domain of human MKP5

Tao, X., Tong, L.

(2007) Protein Sci 16: 880-886

Released	2007-08-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity protein phosphatase 10 (protein)
Unique Ligands	CL

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2R9R	Download File View File

Shaker family voltage dependent potassium channel (kv1.2-kv2.1 paddle chimera channel) in association with beta subunit

Long, S.B., Tao, X., Campbell, E.B., Mackinnon, R.

(2007) Nature 450: 376-382

Released	2007-11-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Rattus norvegicus
Macromolecule	Paddle chimera voltage gated potassium channel Kv1.2-Kv2.1 (protein) Voltage-gated potassium channel subunit beta-2 (protein)
Unique Ligands	K, NAP, PGW

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3JYC	Download File View File

Crystal structure of the eukaryotic strong inward-rectifier K+ channel Kir2.2 at 3.1 Angstrom resolution

Tao, X.

(2009) Science 326: 1668-1674

Released	2010-01-12
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Gallus gallus
Macromolecule	Inward-rectifier K+ channel Kir2.2 (protein)
Unique Ligands	K

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3LNM	Download File View File

F233W mutant of the Kv2.1 paddle-Kv1.2 chimera channel

Tao, X., Lee, A., Limapichat, W., Dougherty, D.A., MacKinnon, R.

(2010) Science 328: 67-73

Released	2010-04-14
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Rattus norvegicus
Macromolecule	F233W mutant of the Kv2.1 paddle-Kv1.2 chimera (protein) Voltage-gated potassium channel subunit beta-2 (protein)
Unique Ligands	K, NAP, PGW

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3SPC	Download File View File

Inward rectifier potassium channel Kir2.2 in complex with dioctanoylglycerol pyrophosphate (DGPP)

Hansen, S.B., Tao, X., MacKinnon, R.

(2011) Nature 477: 495-498

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.454 Å
Organisms	Gallus gallus
Macromolecule	Inward-rectifier K+ channel Kir2.2 (protein)
Unique Ligands	K, P8P

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3SPG	Download File View File

Inward rectifier potassium channel Kir2.2 R186A mutant in complex with PIP2

Hansen, S.B., Tao, X., MacKinnon, R.

(2011) Nature 477: 495-498

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.613 Å
Organisms	Gallus gallus
Macromolecule	Inward-rectifier K+ channel Kir2.2 (protein)
Unique Ligands	K, PIO

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3SPH	Download File View File

Inward rectifier potassium channel Kir2.2 I223L mutant in complex with PIP2

Hansen, S.B., Tao, X., MacKinnon, R.

(2011) Nature 477: 495-498

Released	2011-08-24
Method	X-RAY DIFFRACTION 3.003 Å
Organisms	Gallus gallus
Macromolecule	Inward-rectifier K+ channel Kir2.2 (protein)
Unique Ligands	K, PIO

1 to 25 of 68 Structures

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