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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Citation Author = "Tirado-Rives, J."

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This query matches 30 Structures.

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2OTJ	Download File View File

13-deoxytedanolide bound to the large subunit of Haloarcula marismortui

Blaha, G., Schroeder, S.J., Tirado-Rives, J.

(2007) J Mol Biol 367: 1471-1479

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	13T, CD, CL, K, MG, NA

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2OTL	Download File View File

Girodazole bound to the large subunit of Haloarcula marismortui

Blaha, G., Schroeder, S.J., Tirado-Rives, J.

(2007) J Mol Biol 367: 1471-1479

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Haloarcula marismortui
Macromolecule	Unique protein chains: 29 Unique nucleic acid chains: 2
Unique Ligands	CD, CL, GIR, K, MG, NA

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3DG8	Download File View File

Quadruple mutant (N51I+C59R+S108N+I164L) Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with RJF670, NADPH, and dUMP

Dasgupta, T., Chitnumsub, P., Maneeruttanarungroj, C., Kamchonwongpaisan, S., Nichols, S., Lyons, T.M., Tirado-Rives, J., Jorgensen, W.L., Yuthavong, Y., Anderson, K.S.

(2009) ACS Chem Biol 4: 29-40

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Plasmodium falciparum
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	NDP, RJ6, UMP

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3DGA	Download File View File

Wild-type Plasmodium falciparum dihydrofolate reductase-thymidylate synthase (PfDHFR-TS) complexed with RJF01302, NADPH, and dUMP

Dasgupta, T., Chitnumsub, P., Maneeruttanarungroj, C., Kamchonwongpaisan, S., Nichols, S., Lyons, T.M., Tirado-Rives, J., Jorgensen, W.L., Yuthavong, Y., Anderson, K.S.

(2009) ACS Chem Biol 4: 29-40

Released	2009-01-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Plasmodium falciparum
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	NDP, RJ1, UMP

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6B1C	Download File View File

Macrophage Migration Inhibitory Factor in complex with a Naphthyridinone Inhibitor (4a)

Krimmer, S.G., Robertson, M.J., Jorgensen, W.L.

(2017) ACS Med Chem Lett 8: 1287-1291

Released	2018-01-03
Method	X-RAY DIFFRACTION 2.163 Å
Organisms	Homo sapiens
Macromolecule	Macrophage migration inhibitory factor (protein)
Unique Ligands	C9J, SO4

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6B1K	Download File View File

Macrophage Migration Inhibitory Factor in Complex with a Naphthyridinone Inhibitor (3a)

Krimmer, S.G., Robertson, M.J., Jorgensen, W.L.

(2017) ACS Med Chem Lett 8: 1287-1291

Released	2018-01-03
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	Homo sapiens
Macromolecule	Macrophage migration inhibitory factor (protein)
Unique Ligands	C9G, GOL, SO4

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6B2C	Download File View File

Macrophage Migration Inhibitory Factor in Complex with a Naphthyridinone Inhibitor (4b)

Krimmer, S.G., Robertson, M.J., Jorgensen, W.L.

(2017) ACS Med Chem Lett 8: 1287-1291

Released	2018-01-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Macrophage migration inhibitory factor (protein)
Unique Ligands	C9Y, SO4

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6PF3	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-chlorobenzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.391 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	OE7, UMP

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6PF4	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)acetic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.854 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	OF7, UMP

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6PF5	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxyphenyl)acetic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	OED, UMP

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6PF6	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)terephthalic acid

Czyzyk, D.L., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-16
Method	X-RAY DIFFRACTION 2.502 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase,Thymidylate synthase (protein)
Unique Ligands	OEJ, UMP

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6PF7	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)benzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.795 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG7, SO4, UFP

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6PF8	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-chlorobenzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.533 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OE7, UFP

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6PF9	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)acetic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OF7, SO4, UFP

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6PFA	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-((4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)methyl)benzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OF4, SO4, UFP

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6PFB	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 3-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)propanoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 3.089 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG4, UFP

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6PFC	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxyphenyl)acetic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-16
Method	X-RAY DIFFRACTION 2.689 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OED, UFP

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6PFD	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)terephthalic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 3.324 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OEJ, UFP

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6PFE	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxybenzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.812 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OEA, UFP

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6PFF	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-cyanobenzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.982 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG1, SO4, UFP

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6PFG	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-carbamoylbenzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.706 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OFJ, SO4, UFP

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6PFH	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-cyanophenyl)acetic acid.

Czyzyk, D.C., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.94 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OFD, UFP

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6PFI	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 3-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-(carboxymethyl)benzoic acid.

Czyzyk, D.J., Anderson, K.S., Jorgensen, W.L., Valhondo, M.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OEP, UFP

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6XJK	Download File View File

JAK2 JH2 in complex with JAK067

Puleo, D.E., Krimmer, S.G., Newton, A.S., Schlessinger, J., Jorgensen, W.L.

(2020) J Chem Theory Comput 16: 7184-7194

Released	2020-11-25
Method	X-RAY DIFFRACTION 2.02350796538 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	V4D

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7L10	Download File View File

CRYSTAL STRUCTURE OF THE SARS-COV-2 (2019-NCOV) MAIN PROTEASE IN COMPLEX WITH COMPOUND 4

Deshmukh, M.G., Ippolito, J.A., Stone, E.A., Jorgensen, W.L., Anderson, K.S.

(2021) ACS Cent Sci 7: 467-475

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	XEY