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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Trottet, L."

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Search Summary

This query matches 29 Structures.

Refinements

Structure Determination Methodology

experimental (29)

Scientific Name of Source Organism

	Homo sapiens (9)
	Saccharomyces cerevisiae S288C (8)
	Saccharomyces cerevisiae W303 (5)
	Mus musculus (4)
	Saccharomyces cerevisiae (4)
	synthetic construct (3)
	Xenopus laevis (2)
	Staphylococcus aureus (1)

Taxonomy

	Eukaryota (28)
	other sequences (3)
	Bacteria (1)

Experimental Method

	ELECTRON MICROSCOPY (19)
	X-RAY DIFFRACTION (9)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (29)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (2)
	2.5 - 3.0 (4)
	3.0 - 3.5 (11)
	3.5 - 4.0 (6)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (6)
	2020 - 2024 (22)

Enzyme Classification Name

	Translocases (13)
	Transferases (4)
	Hydrolases (2)
	Lyases (2)

Membrane Protein Annotation

	MemProtMD (16)
	PDBTM (16)
	OPM (15)
	mpstruc (15)

Symmetry Type

	Asymmetric (28)
	Cyclic (2)

AllSelected

1 to 25 of 29 Structures

Page 1 of 2

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2L1X \| pdb_00002l1x	Download File View File

The Solution Structure Of Human Parathyroid Hormone-Related Protein

Lin, K., You, Q., Lin, D., Liu, J.

To be published

Released	2011-08-10
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Parathyroid hormone (protein)

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4YWZ \| pdb_00004ywz	Download File View File

Crystal structure of the extracellular receptor domain of the essential sensor kinase WalK from Staphylococcus aureus

Ji, Q., Wawrzak, Z., He, C.

(2016) Nat Commun 7: 11000-11000

Released	2016-03-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus
Macromolecule	Sensor protein kinase WalK (protein)

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6P25 \| pdb_00006p25	Download File View File

Structure of S. cerevisiae protein O-mannosyltransferase Pmt1-Pmt2 complex bound to the sugar donor and a peptide acceptor

Bai, L., Li, H.

(2019) Nat Struct Mol Biol 26: 704-711

Released	2019-07-10
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae W303
Macromolecule	Dolichyl-phosphate-mannose--protein mannosyltransferase 1 (protein) Dolichyl-phosphate-mannose--protein mannosyltransferase 2 (protein) acceptor peptide (protein)
Unique Ligands	CPL, NAG, NNM

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6P28 \| pdb_00006p28	Download File View File

Crystal structure of the MIR domain (aa 337-532) of the S. cerevisiae mannosyltransferase Pmt2

Bai, L., Li, H.

(2019) Nat Struct Mol Biol 26: 704-711

Released	2019-07-10
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Dolichyl-phosphate-mannose--protein mannosyltransferase 2 (protein)

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6P2R \| pdb_00006p2r	Download File View File

Structure of S. cerevisiae protein O-mannosyltransferase Pmt1-Pmt2 complex bound to the sugar donor

Bai, L., Li, H.

(2019) Nat Struct Mol Biol 26: 704-711

Released	2019-07-10
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae W303
Macromolecule	Dolichyl-phosphate-mannose--protein mannosyltransferase 1 (protein) Dolichyl-phosphate-mannose--protein mannosyltransferase 2 (protein)
Unique Ligands	CPL, NAG, NNM

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6PSX \| pdb_00006psx	Download File View File

Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the PI4P-activated form

Bai, L., Li, H.

(2019) Nat Commun 10: 4142-4142

Released	2019-09-25
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Saccharomyces cerevisiae W303
Macromolecule	Cell division control protein 50 (protein) Probable phospholipid-transporting ATPase DRS2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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6PSY \| pdb_00006psy	Download File View File

Cryo-EM structure of S. cerevisiae Drs2p-Cdc50p in the autoinhibited apo form

Bai, L., Li, H.

(2019) Nat Commun 10: 4142-4142

Released	2019-09-25
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Saccharomyces cerevisiae W303
Macromolecule	Cell division control protein 50 (protein) Probable phospholipid-transporting ATPase DRS2 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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6WB9 \| pdb_00006wb9	Download File View File

Structure of the S. cerevisiae ER membrane complex

Bai, L., Li, H.

(2020) Nature 584: 475-478

Released	2020-06-03
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Saccharomyces cerevisiae W303
Macromolecule	Unique protein chains: 8
Unique Ligands	NAG, POV

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7KY5 \| pdb_00007ky5	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf2-Lem3 complex in the E2P transition state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.98 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF2 (protein)
Unique Ligands	ALF, CLR, MG, NAG
Unique branched monosaccharides	MAN, NAG

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7KY6 \| pdb_00007ky6	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf1-Lem3 complex in the apo E1 state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF1 (protein)
Unique Ligands	MG, NAG
Unique branched monosaccharides	MAN, NAG

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7KY7 \| pdb_00007ky7	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf2-Lem3 complex in the apo E1 state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.08 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF2 (protein)
Unique Ligands	CLR, MG
Unique branched monosaccharides	MAN, NAG

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7KY8 \| pdb_00007ky8	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf2-Lem3 complex in the E1-ATP state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.85 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF2 (protein)
Unique Ligands	ACP, CLR, MAN, MG, NAG
Unique branched monosaccharides	MAN, NAG

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7KY9 \| pdb_00007ky9	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf2-Lem3 complex in the E1-ADP state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 4.05 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF2 (protein)
Unique Ligands	ADP, ALF, MAN, MG, NAG
Unique branched monosaccharides	MAN, NAG

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7KYA \| pdb_00007kya	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf2-Lem3 complex in the E2P state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF2 (protein)
Unique Ligands	BEF, CLR, MG, NAG
Unique branched monosaccharides	MAN, NAG

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7KYB \| pdb_00007kyb	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf1-Lem3 complex in the E1-ADP state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF1 (protein)
Unique Ligands	ADP, ALF, MG, NAG, POV
Unique branched monosaccharides	MAN, NAG

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7KYC \| pdb_00007kyc	Download File View File

Structure of the S. cerevisiae phosphatidylcholine flippase Dnf1-Lem3 complex in the E2P state

Bai, L., You, Q., Jain, B.K., Duan, H.D., Kovach, A., Graham, T.R., Li, H.

(2020) Elife 9:

Released	2021-01-06
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Alkylphosphocholine resistance protein LEM3 (protein) Phospholipid-transporting ATPase DNF1 (protein)
Unique Ligands	BEF, MG, NAG, POV
Unique branched monosaccharides	MAN, NAG

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7RD6 \| pdb_00007rd6	Download File View File

Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P state

Bai, L., Jain, B.K., You, Q., Duan, H.D., Graham, T.R., Li, H.

(2021) Nat Commun 12: 5963-5963

Released	2021-09-29
Method	ELECTRON MICROSCOPY 3.25 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Probable phospholipid-transporting ATPase NEO1 (protein)
Unique Ligands	BEF, MG

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7RD7 \| pdb_00007rd7	Download File View File

Structure of the S. cerevisiae P4B ATPase lipid flippase in the E2P-transition state

Bai, L., Jain, B.K., You, Q., Duan, H.D., Graham, T.R., Li, H.

(2021) Nat Commun 12: 5963-5963

Released	2021-09-29
Method	ELECTRON MICROSCOPY 3.08 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Probable phospholipid-transporting ATPase NEO1 (protein)
Unique Ligands	ALF, MG

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7RD8 \| pdb_00007rd8	Download File View File

Structure of the S. cerevisiae P4B ATPase lipid flippase in the E1-ATP state

Bai, L., Jain, B.K., You, Q., Duan, H.D., Graham, T.R., Li, H.

(2021) Nat Commun 12: 5963-5963

Released	2021-09-29
Method	ELECTRON MICROSCOPY 5.64 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Probable phospholipid-transporting ATPase NEO1 (protein)
Unique Ligands	ACP, MG

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7V9F \| pdb_00007v9f	Download File View File

Selenomethionine mutant (L740Sem) of BEN4 domain of protein Bend3 with DNA

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein) DNA (5'-D(GPCPAPCPCPGPCPGPTPGPGPGPGPCPCPA)-3') (nucleic acid) DNA (5'-D(TPGPGPCPCPCPCPAPCPGPCPGPGPTPGPC)-3') (nucleic acid)
Unique Ligands	CIT

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7V9G \| pdb_00007v9g	Download File View File

Native BEN4 domain of protein Bend3 with DNA

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein) DNA (5'-D(GPCPAPCPCPGPCPGPTPGPGPGPGPCPCPA)-3') (nucleic acid) DNA (5'-D(TPGPGPCPCPCPCPAPCPGPCPGPGPTPGPC)-3') (nucleic acid)

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7V9H \| pdb_00007v9h	Download File View File

The BEN3 domain of protein Bend3

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 2.692 Å
Organisms	Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein)

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7V9I \| pdb_00007v9i	Download File View File

The Monomer mutant of BEN4 domain of protein Bend3 with DNA

Zhang, J., Zhang, Y., You, Q., Huang, C., Zhang, T., Wang, M., Zhang, T., Yang, X., Xiong, J., Li, Y., Liu, C.P., Zhang, Z., Xu, R.M., Zhu, B.

(2022) Science 375: 1053-1058

Released	2022-02-16
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	BEN domain-containing protein 3 (protein) DNA (5'-D(APCPCPGPCPGPTPGPGPGPGPC)-3') (nucleic acid) DNA (5'-D(GPCPCPCPCPAPCPGPCPGPGPT)-3') (nucleic acid)