RCSB PDB: Search

6NZS	Download File View File

Dextranase AoDex KQ11

Ren, W., Yan, W., Gu, L., Feng, Y., Dong, D., Wang, S., Wang, C., Lyu, M.

To be published

Released	2019-02-27
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Pseudarthrobacter oxydans
Macromolecule	Dextranase (protein)

6VKS	Download File View File

Cryo-electron microscopy structures of a gonococcal multidrug efflux pump illuminate a mechanism of drug recognition with ampicillin

Moseng, M.A., Lyu, M.

(2020) mBio 11:

Released	2020-07-01
Method	ELECTRON MICROSCOPY 3.02 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Efflux pump membrane transporter (protein)
Unique Ligands	AIX, PTY

6VKT	Download File View File

Cryo-electron microscopy structures of a gonococcal multidrug efflux pump illuminate a mechanism of erythromycin drug recognition

Lyu, M., Moseng, M.A.

(2020) mBio 11:

Released	2020-07-01
Method	ELECTRON MICROSCOPY 2.72 Å
Organisms	Neisseria gonorrhoeae
Macromolecule	Efflux pump membrane transporter (protein)
Unique Ligands	ERY, PTY

6VQQ	Download File View File

CryoEM Structure of the Plasmodium falciparum transporter PfFNT

Su, C.C., Lyu, M.

(2021) EMBO Rep 22: e51628-e51628

Released	2021-02-03
Method	ELECTRON MICROSCOPY 2.56 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Formate-nitrite transporter (protein)

6VQR	Download File View File

CryoEM Structure of the PfFNT-inhibitor complex

Su, C.C., Lyu, M.

(2021) EMBO Rep 22: e51628-e51628

Released	2021-02-03
Method	ELECTRON MICROSCOPY 2.78 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Formate-nitrite transporter (protein)
Unique Ligands	R7M

6WTI	Download File View File

The Cryo-EM structure of the ubiquinol oxidase from Escherichia coli

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 2.38 Å
Organisms	Escherichia coli
Macromolecule	Cytochrome o ubiquinol oxidase (protein) Cytochrome o ubiquinol oxidase, subunit I (protein) Cytochrome o ubiquinol oxidase, subunit IV (protein) Ubiquinol oxidase subunit 2 (protein)
Unique Ligands	3PE, CU, HEM, HEO, U9V, UQ8

6WTZ	Download File View File

Cryo-EM structure of E. Coli OmpF

Morgan, C.E., Su, C.-C., Lyu, M., Yu, E.W.

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 3.15 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane porin F (protein)

6WU0	Download File View File

CryoEM structure of Burkholderia pseudomallei hopanoid biosynthesis-associated RND transporter HpnN

Lyu, M., Yu, E.W.

(2021) Nat Methods 18: 69-75

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.59 Å
Organisms	Burkholderia pseudomallei MSHR346
Macromolecule	Hopanoid biosynthesis associated RND transporter like protein HpnN (protein)

6WU6	Download File View File

succinate-coenzyme Q reductase

Lyu, M., Su, C.-C., Morgan, C.E., Yu, E.W.

(2021) Nat Methods 18: 69-75

Released	2021-02-03
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Escherichia coli Escherichia coli 908573 Escherichia coli SE11
Macromolecule	Succinate dehydrogenase (protein) Succinate dehydrogenase flavoprotein subunit (protein) Succinate dehydrogenase hydrophobic membrane anchor subunit (protein) Succinate dehydrogenase iron-sulfur subunit (protein)
Unique Ligands	F3S, FAD, FES, HEM, NA, SF4

7JZ2	Download File View File

Succinate: quinone oxidoreductase SQR from E.coli K12

Lyu, M., Su, C.-C., Morgan, C.E., Bolla, J.R., Robinson, C.V., Yu, E.W.

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Escherichia coli K-12
Macromolecule	Succinate dehydrogenase cytochrome b556 subunit (protein) Succinate dehydrogenase flavoprotein subunit (protein) Succinate dehydrogenase hydrophobic membrane anchor subunit (protein) Succinate dehydrogenase iron-sulfur subunit (protein)
Unique Ligands	3PE, F3S, FAD, FES, HEM, NA, SF4, UQ2

7JZ3	Download File View File

Osmoporin OmpC from E.coli K12

Lyu, M., Su, C., Morgan, C.E., Bolla, J.R., Robinson, C.V., Yu, E.W.

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 2.56 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein C (protein)

7JZ6	Download File View File

The Cryo-EM structure of the Catalase-peroxidase from Escherichia coli

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 2.53 Å
Organisms	Escherichia coli
Macromolecule	Catalase-peroxidase (protein)
Unique Ligands	HEM

7JZH	Download File View File

The Cryo-EM structure of the Glutamate decarboxylase from Escherichia coli

(2021) Nat Methods 18: 69-75

Released	2021-01-20
Method	ELECTRON MICROSCOPY 3.59 Å
Organisms	Escherichia coli
Macromolecule	Glutamate decarboxylase (protein)

7K7M	Download File View File

Crystal Structure of a membrane protein

(2021) PLoS Biol 19: e3001370-e3001370

Released	2021-09-22
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Drug exporters of the RND superfamily-like protein (protein)
Unique branched monosaccharides	GLC, U2D

7K8A	Download File View File

CryoEM structure of a trehalose monomycolate transporter in lipid nanodiscs

(2021) PLoS Biol 19: e3001370-e3001370

Released	2021-09-22
Method	ELECTRON MICROSCOPY 3.65 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Drug exporters of the RND superfamily-like protein (protein)

7K8B	Download File View File

CryoEM structure of a trehalose monomycolate transporter in lipid nanodiscs

(2021) PLoS Biol 19: e3001370-e3001370

Released	2021-09-22
Method	ELECTRON MICROSCOPY 2.94 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Drug exporters of the RND superfamily-like protein (protein)

7K8C	Download File View File

CryoEM structure of a trehalose monomycolate transporter in lipid nanodiscs

(2021) PLoS Biol 19: e3001370-e3001370

Released	2021-09-22
Method	ELECTRON MICROSCOPY 4.27 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Trehalose monomycolate exporter MmpL3 (protein)

7K8D	Download File View File

CryoEM structure of a trehalose monomycolate transporter in TMM lipid nanodiscs (form II)

(2021) PLoS Biol 19: e3001370-e3001370

Released	2021-09-22
Method	ELECTRON MICROSCOPY 4.33 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Drug exporters of the RND superfamily-like protein (protein)

7KF5	Download File View File

Cryo-electron microscopy structure of the heavy metal efflux pump CusA in the symmetric closed state

(2021) mBio 12:

Released	2021-04-14
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Escherichia coli
Macromolecule	Cation efflux system protein CusA (protein)

7KF6	Download File View File

Cryo-electron microscopy structure of the heavy metal efflux pump CusA in a homogeneous binding copper(1) state

(2021) mBio 12:

Released	2021-04-14
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Escherichia coli
Macromolecule	Cation efflux system protein CusA (protein)
Unique Ligands	CU1

7KF7	Download File View File

Cryo-electron microscopy structure of the heavy metal efflux pump CusA in a heterogeneous 1 open and 2 closed protomer conformation

(2021) mBio 12:

Released	2021-04-14
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Escherichia coli
Macromolecule	Cation efflux system protein CusA (protein)
Unique Ligands	CU1

7KF8	Download File View File

Cryo-electron microscopy structure of the heavy metal efflux pump CusA in a heterogeneous 2 open and 1 closed protomer conformation

(2021) mBio 12:

Released	2021-04-14
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Escherichia coli
Macromolecule	Cation efflux system protein CusA (protein)
Unique Ligands	CU1

7MXO	Download File View File

CryoEM structure of human NKCC1

(2022) Sci Adv 8: eabq0952-eabq0952

Released	2022-09-28
Method	ELECTRON MICROSCOPY 3.47 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 2 (protein)
Unique Ligands	CL, K

7MXY	Download File View File

Cryo-EM structure of PfFNT-inhibitor complex

Yu, E.W., Su, C., Lyu, M.

(2021) EMBO Rep 22: e51628

Released	2021-12-08
Method	ELECTRON MICROSCOPY 2.18 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Formate-nitrite transporter (protein)
Unique Ligands	HV6

7N3N	Download File View File

CryoEM structure of human NKCC1 state Fu-I